Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RIK66_RS22020 Genome accession   NZ_CP134635
Coordinates   4392380..4392907 (-) Length   175 a.a.
NCBI ID   WP_020882840.1    Uniprot ID   A0A839BRA2
Organism   Enterobacter ludwigii strain 93A:C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4387380..4397907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIK66_RS22000 (RIK66_22000) soxS 4387907..4388233 (+) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  RIK66_RS22005 (RIK66_22005) - 4388240..4389805 (-) 1566 WP_063925905.1 EAL domain-containing protein -
  RIK66_RS22010 (RIK66_22010) - 4390145..4391545 (-) 1401 WP_032681915.1 sensor domain-containing diguanylate cyclase -
  RIK66_RS22015 (RIK66_22015) - 4392035..4392316 (+) 282 WP_020882839.1 YjcB family protein -
  RIK66_RS22020 (RIK66_22020) ssb 4392380..4392907 (-) 528 WP_020882840.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RIK66_RS22025 (RIK66_22025) uvrA 4393159..4395981 (+) 2823 WP_014168220.1 excinuclease ABC subunit UvrA -
  RIK66_RS22030 (RIK66_22030) - 4395985..4396338 (-) 354 WP_014168219.1 MmcQ/YjbR family DNA-binding protein -
  RIK66_RS22035 (RIK66_22035) - 4396341..4396757 (-) 417 WP_014168218.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RIK66_RS22040 (RIK66_22040) aphA 4396871..4397584 (-) 714 WP_014168217.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18705.74 Da        Isoelectric Point: 5.2456

>NTDB_id=882504 RIK66_RS22020 WP_020882840.1 4392380..4392907(-) (ssb) [Enterobacter ludwigii strain 93A:C]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=882504 RIK66_RS22020 WP_020882840.1 4392380..4392907(-) (ssb) [Enterobacter ludwigii strain 93A:C]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCTGGTGAGTATCTGCGTAAAGGTTCTCAGGTTTATATT
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAAGCCGGCGCTGAGAAGTACACCACGGAAGTTGTGGTCAACGTGGG
TGGCACCATGCAGATGCTCGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGTCAGCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGTGGCGCGCAGTCTCGCCCACAGCAGCAGTCCGCGCCAGCA
CCGTCTAACGAACCCCCAATGGACTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A839BRA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.777
  ssb Glaesserella parasuis strain SC1401

56.522

100

0.594
  ssb Neisseria meningitidis MC58

46.629

100

0.474
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.474
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.366