Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RKQ55_RS16835 Genome accession   NZ_CP134586
Coordinates   3532286..3533773 (+) Length   495 a.a.
NCBI ID   WP_005129889.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1026     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3527286..3538773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ55_RS16810 (RKQ55_16850) ribD 3528202..3529287 (-) 1086 WP_005129886.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  RKQ55_RS16815 (RKQ55_16855) nrdR 3529303..3529761 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  RKQ55_RS16820 (RKQ55_16860) - 3529920..3531317 (-) 1398 WP_000738520.1 ammonium transporter -
  RKQ55_RS16825 (RKQ55_16865) glnK 3531375..3531713 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  RKQ55_RS16830 (RKQ55_16870) - 3531993..3532220 (+) 228 WP_000894500.1 accessory factor UbiK family protein -
  RKQ55_RS16835 (RKQ55_16875) comM 3532286..3533773 (+) 1488 WP_005129889.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RKQ55_RS16840 (RKQ55_16880) - 3533788..3535222 (-) 1435 Protein_3284 PLP-dependent aminotransferase family protein -
  RKQ55_RS16845 (RKQ55_16885) - 3535334..3536110 (+) 777 WP_005129892.1 aldolase -
  RKQ55_RS16850 (RKQ55_16890) - 3536126..3537004 (+) 879 WP_005129893.1 dihydrodipicolinate synthase family protein -
  RKQ55_RS16855 (RKQ55_16895) - 3537047..3537859 (-) 813 WP_000975212.1 TorF family putative porin -
  RKQ55_RS16860 (RKQ55_16900) - 3537916..3538086 (-) 171 WP_000492276.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54481.38 Da        Isoelectric Point: 7.2553

>NTDB_id=881904 RKQ55_RS16835 WP_005129889.1 3532286..3533773(+) (comM) [Acinetobacter baumannii strain XH1026]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLSENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQGCLNQALSPKQLEQFAILDDTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=881904 RKQ55_RS16835 WP_005129889.1 3532286..3533773(+) (comM) [Acinetobacter baumannii strain XH1026]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGATTACCCTCTCTAACTATTGTAGGCTTAGCGGAAGCAGCGGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTTCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTGGCTCTAGACGGTCATGTAAGACCCGTATCAGGCGCTTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCCGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCAGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCATGCGCAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGACCTTGCAGATGTTAAAGGTCAGCTACGGCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACACTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCTTCACGCCTGCCTTCTATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACCTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTTCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCGGCTCGGCAAATTACTTATCCTGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAGCGCTATCAAAACCGCATATCGGGAC
CGTTACTTGACCGCATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACGCCTGCAGAA
GATTCTACAACTGTGCGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGGTTGTTTGAATCAGGCGCT
CTCACCAAAACAATTAGAGCAGTTCGCTATTCTGGATGACACGTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGCGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCTCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.411

100

0.515
  comM Glaesserella parasuis strain SC1401

50.701

100

0.511
  comM Haemophilus influenzae Rd KW20

49.9

100

0.503
  comM Vibrio campbellii strain DS40M4

48.889

100

0.489
  comM Legionella pneumophila str. Paris

48.594

100

0.489
  comM Legionella pneumophila strain ERS1305867

48.594

100

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.6

100

0.471