Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RKQ56_RS17830 Genome accession   NZ_CP134583
Coordinates   3682358..3683845 (+) Length   495 a.a.
NCBI ID   WP_032030865.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1032     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3677358..3688845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ56_RS17805 (RKQ56_17830) ribD 3678275..3679360 (-) 1086 WP_001292498.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  RKQ56_RS17810 (RKQ56_17835) nrdR 3679376..3679834 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  RKQ56_RS17815 (RKQ56_17840) - 3679992..3681389 (-) 1398 WP_032030864.1 ammonium transporter -
  RKQ56_RS17820 (RKQ56_17845) glnK 3681447..3681785 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  RKQ56_RS17825 (RKQ56_17850) - 3682065..3682292 (+) 228 WP_000894500.1 accessory factor UbiK family protein -
  RKQ56_RS17830 (RKQ56_17855) comM 3682358..3683845 (+) 1488 WP_032030865.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RKQ56_RS17835 (RKQ56_17860) - 3683860..3685293 (-) 1434 WP_032030866.1 PLP-dependent aminotransferase family protein -
  RKQ56_RS17840 (RKQ56_17865) - 3685405..3686181 (+) 777 WP_032030867.1 aldolase -
  RKQ56_RS17845 (RKQ56_17870) - 3686197..3687075 (+) 879 WP_032030868.1 dihydrodipicolinate synthase family protein -
  RKQ56_RS17850 (RKQ56_17875) - 3687118..3687930 (-) 813 WP_000975212.1 TorF family putative porin -
  RKQ56_RS17855 (RKQ56_17880) - 3687987..3688157 (-) 171 WP_000097144.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54497.42 Da        Isoelectric Point: 7.4186

>NTDB_id=881856 RKQ56_RS17830 WP_032030865.1 3682358..3683845(+) (comM) [Acinetobacter baumannii strain XH1032]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRKRVIYAYEQQMQRQDCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=881856 RKQ56_RS17830 WP_032030865.1 3682358..3683845(+) (comM) [Acinetobacter baumannii strain XH1032]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCGGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTGGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCAGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCATGCGCAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGACCTTGCAGATGTTAAAGGTCAGCTACGGCCACGACGTGCACTAGAAATTGCTGCCGCTGGGGGACATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCCAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTTCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCACCAGAAAGTATTAAGCGCTATCAAAACCGCATATCGGGAC
CATTACTTGACCGCATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACACCTGCAGAA
GATTCTACAACTGTACGAAAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGATTGTTTGAATCAGGCGCT
CTCACCAAAACAACTGGAACAACATGCCGTTCTCGATAGTACTTCACAACGAATGATTGAAATGGCCCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACTATTGCTGATTTGGCCCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.008

100

0.511
  comM Glaesserella parasuis strain SC1401

50.501

100

0.509
  comM Haemophilus influenzae Rd KW20

49.499

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.4

100

0.469