Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RHP74_RS30275 Genome accession   NZ_CP134498
Coordinates   6571671..6573164 (+) Length   497 a.a.
NCBI ID   WP_311096873.1    Uniprot ID   -
Organism   Pseudomonas sp. SG20052     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6566671..6578164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP74_RS30240 (RHP74_30240) - 6566870..6567295 (-) 426 WP_008030499.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RHP74_RS30245 (RHP74_30245) - 6567510..6568847 (-) 1338 WP_010465110.1 ammonium transporter -
  RHP74_RS30250 (RHP74_30250) glnK 6568885..6569223 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  RHP74_RS30255 (RHP74_30255) - 6569641..6569901 (+) 261 WP_010465113.1 accessory factor UbiK family protein -
  RHP74_RS30260 (RHP74_30260) - 6570322..6570849 (+) 528 WP_145306588.1 Bro-N domain-containing protein -
  RHP74_RS30265 (RHP74_30265) - 6570846..6571124 (-) 279 WP_311096871.1 HigA family addiction module antitoxin -
  RHP74_RS30270 (RHP74_30270) - 6571322..6571492 (+) 171 WP_311096872.1 hypothetical protein -
  RHP74_RS30275 (RHP74_30275) comM 6571671..6573164 (+) 1494 WP_311096873.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RHP74_RS30280 (RHP74_30280) - 6573222..6573800 (+) 579 WP_083375476.1 hypothetical protein -
  RHP74_RS30285 (RHP74_30285) - 6574142..6575353 (-) 1212 WP_077748592.1 aldose 1-epimerase family protein -
  RHP74_RS30290 (RHP74_30290) - 6575620..6576996 (+) 1377 WP_311096874.1 SrfA family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53072.11 Da        Isoelectric Point: 7.6893

>NTDB_id=880555 RHP74_RS30275 WP_311096873.1 6571671..6573164(+) (comM) [Pseudomonas sp. SG20052]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDIECLGELALSGAVRAVRGVLPAALAARKAGRSLMVPRENAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYVSNGLLYASKPYPDLNEVQGQISAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
NEALEVAAIQSVTSCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPALKP
GDDTATAAELVAAARERQNKRQGCANAFLDLPGLRRHCELSTTDEAWLETACERLTLSLRSAHRLLKVARTLADLEQVNA
ITREHLAEALQYRPASA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=880555 RHP74_RS30275 WP_311096873.1 6571671..6573164(+) (comM) [Pseudomonas sp. SG20052]
ATGTCCCTCTCCATCGTCCACAGCCGCGCCCAGATTGGCGTGGATGCGCCCGCCGTCACCGTCGAAGTCCATCTGGCCAA
TGGCTTGCCGTCCCTGACGATGGTCGGTTTGCCCGAAGCGGCAGTGAAGGAAAGCAAGGACCGGGTGCGTAGCGCGATCA
TCAATTCAGGCCTGCAATTTCCGGCGCGGCGCATCACGCTGAATCTCGCGCCTGCGGACTTACCTAAAGATGGTGGACGG
TTTGATCTGGCGATCGCCTTGGGGATTCTGTCCGCCAGCGTGCAGGTGCCGACATTGACACTGGATGACATTGAATGCCT
GGGAGAACTGGCACTGTCAGGCGCGGTACGTGCCGTGAGAGGCGTATTGCCGGCTGCGCTGGCCGCACGCAAGGCCGGGC
GGTCGCTGATGGTGCCGCGGGAGAATGCCGAAGAAGCCTGCCTGGCGTCGGGATTGAAGGTGTTTGCAGTGGATCACCTG
CTGGAAGCCGTTGCGCACTTCAATGGACATACGCCGGTTGAACCCTACGTTTCCAATGGCTTGCTCTACGCCAGCAAACC
CTATCCGGACTTGAATGAAGTGCAGGGGCAAATCTCGGCCAAGCGCGCCTTGCTGATTGCGGCGGCTGGGGCTCATAACC
TGCTATTTAGCGGACCGCCGGGGACGGGGAAAACGTTGTTGGCGAGTCGTTTGCCGGGTTTGCTTCCACCGCTCGCCGAA
AACGAGGCGCTGGAAGTCGCAGCCATTCAATCCGTCACCAGTTGCGTGCCCTTGAGCCATTGGCCGCAACGACCGTTCCG
CCAGCCCCATCACTCGGCTTCCGGCCCTGCATTGGTGGGCGGTGGTTCTAAACCACAACCCGGCGAAATCACCCTAGCCC
ACCATGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGATCGCAAGGTGCTGGAGGTTTTAAGGGAGCCGCTGGAGTCC
GGCCACATCGTAATTTCCCGCGCCAAGGACCGCGTGAGGTTTCCGGCCCGCTTTCAATTGGTGGCCGCGATGAACCCCTG
CCCCTGTGGATATCTCGGCGAACCCAGTGGCAAATGCAGCTGTACACCGGACATGGTCCAGCGTTACCGAAACAAACTGT
CAGGACCGCTGCTGGATCGCATCGACCTGCATCTGACCGTCGCGCGGGAAGCCACGGCGTTGAATCCTGCGCTCAAACCC
GGTGATGACACCGCCACTGCTGCGGAACTGGTCGCCGCCGCCCGGGAGCGTCAAAACAAACGCCAAGGTTGTGCCAACGC
ATTCCTTGATTTGCCGGGCCTGCGTCGACACTGCGAGTTATCCACAACCGATGAAGCCTGGCTGGAAACCGCCTGCGAGC
GTTTGACCTTGTCACTCCGGTCGGCCCACCGCCTGCTAAAGGTAGCCCGTACATTGGCAGATCTTGAACAGGTAAATGCA
ATTACACGCGAGCATTTGGCGGAAGCGCTGCAATACCGACCGGCCTCAGCGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.747

99.598

0.545
  comM Vibrio cholerae strain A1552

54.545

99.598

0.543
  comM Haemophilus influenzae Rd KW20

53.106

100

0.533
  comM Glaesserella parasuis strain SC1401

52.6

100

0.529
  comM Legionella pneumophila str. Paris

50.602

100

0.507
  comM Legionella pneumophila strain ERS1305867

50.602

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.908

100

0.463