Detailed information    

insolico Bioinformatically predicted

Overview

Name   mecA   Type   Regulator
Locus tag   RJW54_RS02170 Genome accession   NZ_CP134487
Coordinates   437976..438698 (+) Length   240 a.a.
NCBI ID   WP_105203856.1    Uniprot ID   -
Organism   Streptococcus suis strain MY1C3_3B     
Function   degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 432976..443698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW54_RS02145 (RJW54_02130) - 433263..434165 (+) 903 WP_002942264.1 SPFH domain-containing protein -
  RJW54_RS02150 (RJW54_02135) - 434251..434460 (+) 210 WP_009910800.1 hypothetical protein -
  RJW54_RS02155 (RJW54_02140) - 434584..435327 (-) 744 WP_009910795.1 amino acid ABC transporter ATP-binding protein -
  RJW54_RS02160 (RJW54_02145) - 435320..436885 (-) 1566 WP_013730562.1 ABC transporter substrate-binding protein/permease -
  RJW54_RS02165 (RJW54_02150) - 437012..437848 (+) 837 WP_013730561.1 undecaprenyl-diphosphate phosphatase -
  RJW54_RS02170 (RJW54_02155) mecA 437976..438698 (+) 723 WP_105203856.1 adaptor protein MecA Regulator
  RJW54_RS02175 (RJW54_02160) - 438695..439867 (+) 1173 WP_002938168.1 glycosyltransferase family 4 protein -
  RJW54_RS02180 (RJW54_02165) sufC 440347..441120 (+) 774 WP_172015503.1 Fe-S cluster assembly ATPase SufC -
  RJW54_RS02185 (RJW54_02170) sufD 441137..442399 (+) 1263 WP_002938159.1 Fe-S cluster assembly protein SufD -
  RJW54_RS02190 (RJW54_02175) - 442401..443627 (+) 1227 WP_002938158.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28014.56 Da        Isoelectric Point: 4.0533

>NTDB_id=880257 RJW54_RS02170 WP_105203856.1 437976..438698(+) (mecA) [Streptococcus suis strain MY1C3_3B]
MKVKQISDSTLKITIKLEDLEERGMELSDFLIPQEKTEEFFYTVLDELDLPMTFRESGMLSFRVTPKPDRVDIFVTKSDL
DQNLNFDEFTDLSELGDVASMTPDEFFKSLEQTVREKSAPDATAVRHLEEVEQEEEADEEEQERYIYYILEFPTIEDLFT
FVGTVDYPVEESELYKMDGHYYLTVLINVENRSKQYPGYILSRMLEFTNDTKLTRPALQEHGTLMLPLAAIEELRKVPTV

Nucleotide


Download         Length: 723 bp        

>NTDB_id=880257 RJW54_RS02170 WP_105203856.1 437976..438698(+) (mecA) [Streptococcus suis strain MY1C3_3B]
ATGAAAGTAAAGCAAATTAGTGATTCAACCTTGAAAATCACTATAAAATTAGAGGATTTGGAAGAGAGAGGAATGGAACT
TTCGGACTTTCTCATTCCGCAAGAAAAGACAGAGGAGTTCTTCTATACTGTTTTGGATGAATTGGATTTACCAATGACTT
TCCGAGAAAGCGGTATGTTGAGTTTTCGTGTGACTCCGAAGCCAGATCGGGTGGACATCTTTGTTACCAAATCTGATTTG
GATCAGAACTTGAATTTTGATGAATTTACAGATTTGTCGGAACTTGGTGATGTCGCAAGTATGACTCCAGATGAGTTTTT
CAAGAGTTTGGAGCAAACCGTTCGTGAGAAAAGTGCACCGGATGCAACAGCAGTTCGTCATTTGGAAGAGGTAGAGCAAG
AGGAAGAAGCAGATGAAGAGGAGCAGGAGCGCTATATTTACTATATTTTGGAATTTCCAACGATAGAGGATCTGTTTACT
TTTGTTGGTACGGTTGATTATCCAGTAGAAGAATCGGAATTATATAAAATGGATGGTCACTACTACTTGACAGTTCTTAT
CAATGTAGAAAATCGTTCCAAGCAGTATCCAGGCTACATTCTCTCAAGAATGTTGGAATTTACCAATGATACTAAGTTGA
CCAGACCTGCTTTACAAGAACACGGAACTTTGATGCTTCCGCTTGCGGCAATCGAGGAGCTTAGGAAGGTTCCGACAGTA
TGA

Domains

Predicted by InterproScan.

Negative regulator of genetic competence (MecA) (MecA)

(1-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Streptococcus pneumoniae Rx1

52.459

100

0.533
  mecA Streptococcus pneumoniae D39

52.459

100

0.533
  mecA Streptococcus pneumoniae R6

52.459

100

0.533
  mecA Streptococcus pneumoniae TIGR4

52.459

100

0.533
  mecA Streptococcus mutans UA159

50.82

100

0.517
  mecA Streptococcus thermophilus LMD-9

47.917

100

0.479
  mecA Streptococcus thermophilus LMG 18311

47.5

100

0.475