Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   RJW55_RS04000 Genome accession   NZ_CP134473
Coordinates   845765..846706 (+) Length   313 a.a.
NCBI ID   WP_043033371.1    Uniprot ID   A0A0Z8I270
Organism   Streptococcus suis strain TMW_SS028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 840765..851706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS03985 (RJW55_03985) - 842540..842665 (+) 126 WP_256769054.1 hypothetical protein -
  RJW55_RS03990 (RJW55_03990) - 842649..843488 (+) 840 WP_231640507.1 hypothetical protein -
  RJW55_RS03995 (RJW55_03995) metG 843698..845701 (+) 2004 WP_043025969.1 methionine--tRNA ligase -
  RJW55_RS04000 (RJW55_04000) coiA 845765..846706 (+) 942 WP_043033371.1 competence protein CoiA Machinery gene
  RJW55_RS04005 (RJW55_04005) pepF 846935..848737 (+) 1803 WP_043026097.1 oligoendopeptidase F Regulator
  RJW55_RS04010 (RJW55_04010) - 848739..849182 (+) 444 WP_014637769.1 hypothetical protein -
  RJW55_RS04015 (RJW55_04015) - 849193..849741 (+) 549 WP_024419199.1 DUF6630 family protein -
  RJW55_RS04020 (RJW55_04020) - 849816..850535 (+) 720 WP_043026118.1 O-methyltransferase -
  RJW55_RS04025 (RJW55_04025) prsA 850599..851600 (+) 1002 WP_043026101.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36289.88 Da        Isoelectric Point: 8.4363

>NTDB_id=880165 RJW55_RS04000 WP_043033371.1 845765..846706(+) (coiA) [Streptococcus suis strain TMW_SS028]
MLVALDEDGQVFNVLENPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCTYFSENESAQHLSLKSSLYKWLQGQEE
VELEAYLPATKQVADLLVNQQLALEVQCSSLPISRLQVRTEAYQQAGIAVLWLLGKDLWLGERLTNLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLEILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIKQDLTPIYQAFDRFYDKAKDKRKQILYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=880165 RJW55_RS04000 WP_043033371.1 845765..846706(+) (coiA) [Streptococcus suis strain TMW_SS028]
ATGTTAGTAGCACTTGATGAAGATGGGCAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTCGCTATTCCTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTAACCCTACGGGATTGCA
CATACTTTTCCGAGAATGAGTCAGCCCAGCATCTGTCCCTCAAGTCCAGTCTGTATAAGTGGTTACAGGGTCAGGAAGAA
GTAGAGTTAGAGGCCTATCTTCCTGCAACCAAGCAGGTGGCAGATCTCTTGGTCAATCAGCAACTTGCCTTGGAAGTCCA
ATGTTCCAGTCTACCCATTTCACGCTTGCAGGTGCGGACTGAGGCATACCAGCAAGCAGGTATAGCTGTTCTGTGGCTTC
TGGGAAAGGATCTCTGGCTTGGCGAACGATTGACCAATCTCCACAAACAATTCCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGACGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGAAATCTTGCGTCTGCCTTTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTATCCCCACATCCGTCT
ACCCCGCTCTGCCATTGGCTTTGCCCAAATCAAGCAAGACCTGACACCGATTTACCAAGCATTTGATCGGTTTTACGACA
AAGCAAAAGATAAGAGAAAACAAATCTTGTATCCACCTATCATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8I270

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.846

99.681

0.537
  coiA Streptococcus pneumoniae TIGR4

52.244

99.681

0.521
  coiA Streptococcus pneumoniae Rx1

52.244

99.681

0.521
  coiA Streptococcus pneumoniae D39

52.244

99.681

0.521
  coiA Streptococcus pneumoniae R6

52.244

99.681

0.521
  coiA Lactococcus lactis subsp. cremoris KW2

43.125

100

0.441