Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RJW55_RS04005 Genome accession   NZ_CP134473
Coordinates   846935..848737 (+) Length   600 a.a.
NCBI ID   WP_043026097.1    Uniprot ID   A0A0Z8I234
Organism   Streptococcus suis strain TMW_SS028     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 841935..853737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS03985 (RJW55_03985) - 842540..842665 (+) 126 WP_256769054.1 hypothetical protein -
  RJW55_RS03990 (RJW55_03990) - 842649..843488 (+) 840 WP_231640507.1 hypothetical protein -
  RJW55_RS03995 (RJW55_03995) metG 843698..845701 (+) 2004 WP_043025969.1 methionine--tRNA ligase -
  RJW55_RS04000 (RJW55_04000) coiA 845765..846706 (+) 942 WP_043033371.1 competence protein CoiA Machinery gene
  RJW55_RS04005 (RJW55_04005) pepF 846935..848737 (+) 1803 WP_043026097.1 oligoendopeptidase F Regulator
  RJW55_RS04010 (RJW55_04010) - 848739..849182 (+) 444 WP_014637769.1 hypothetical protein -
  RJW55_RS04015 (RJW55_04015) - 849193..849741 (+) 549 WP_024419199.1 DUF6630 family protein -
  RJW55_RS04020 (RJW55_04020) - 849816..850535 (+) 720 WP_043026118.1 O-methyltransferase -
  RJW55_RS04025 (RJW55_04025) prsA 850599..851600 (+) 1002 WP_043026101.1 peptidylprolyl isomerase PrsA -
  RJW55_RS04030 (RJW55_04030) - 851961..852446 (+) 486 WP_043026103.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69140.45 Da        Isoelectric Point: 4.6347

>NTDB_id=880166 RJW55_RS04005 WP_043026097.1 846935..848737(+) (pepF) [Streptococcus suis strain TMW_SS028]
MSKQRHEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEQLEAFKAEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLLFPEIADEDGHLVPLSHGNYIHFMESKKREVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYIKLRKKLLGIEDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEHAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=880166 RJW55_RS04005 WP_043026097.1 846935..848737(+) (pepF) [Streptococcus suis strain TMW_SS028]
ATGTCTAAACAACGTCATGAAATTGAAGAAAAATACCAGTGGGATTTGACCACTATTTTCCCAACAGATGAGGCTTGGGA
AGCAGAATTGGCTGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCACTTGCTGGACTCAGCTAAAAGTC
TCTTAGAAATTAGCGAGACGCAACTCGGTCTCATGCGCCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAATGAC
CAAGATACTCGCGAAGGAAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGCTGGAGGCCTTTAAGGCAGAAGAGCCTGCTCTTGTTCAGT
ACAGCCATCAATTTGAAAAACTCTTAGCAGCTAAGGATCATGTCTTGTCACAGGAAGTAGAAGAAGTCCTTGCGGCGACC
AGCGAGATTTTTGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCCAGCCTGCTTTTTCCAGAAATCGCAGATGA
AGATGGTCACTTGGTGCCTCTTTCTCACGGCAACTACATCCACTTTATGGAGTCTAAAAAACGTGAAGTCCGTCAAGAAG
CCTATGAAGCTATGTACGGTACCTACGAGCAATTCCAGCATACCTACGCTAAGACCCTACAGTCTAACGTTAAGGTCAAT
AACTTGAAAGCCCGTTTGCGTAAGTACGATTCAGCCCGTCACGCATCACTTGCAGCCAATTTTATCCCAGAGTCTGTTTA
CGATACATTAGTGGCGGCTGTTAACAAGCACCTTCCGCTCCTGCACCGTTATATCAAGTTGCGTAAGAAACTCTTGGGTA
TTGAGGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGCACCAAGATTTCATACGAAGATGCACTCAAG
AAATGCCAAGAAACCTTGGAAATCTTCGGTGAGGACTATTCAGCTATTGTGAAGGAAGCCTTCGAAAATCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGTTCAGGAGCATATTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAATT
GGCAGGATAACTTGGATAATATGTACACCCTTATCCATGAAACAGGGCATTCTCTTCACTCTATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGTCATTATTCCCTCTTCTTGGCAGAAATTGCTTCAACAACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGATAAGGAACGCTTTGCGATTCTTAACCATTACCTAGATGGTTTCCGTGGCACAGTCT
TCCGCCAGACCCAATTTGCTGAGTTTGAACATGCTATCTATAAGGCAGACCAGGAAGGTCAGGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACTAACGAGAAATACTACGGACTTTCTGCCGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCAGCATCAGCTCTGGCAA
ACAAGATTGTCAATGGTAGCCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATCGCTAAGGCTGGCGTAGACATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8I234

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.667

100

0.697