Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RKE57_RS19605 Genome accession   NZ_CP134450
Coordinates   4261294..4262793 (+) Length   499 a.a.
NCBI ID   WP_311068764.1    Uniprot ID   -
Organism   Stenotrophomonas geniculata strain BR23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4256294..4267793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE57_RS19570 (RKE57_19570) - 4256348..4256599 (+) 252 WP_019661550.1 accessory factor UbiK family protein -
  RKE57_RS19575 (RKE57_19575) arr 4256725..4257159 (+) 435 WP_049480038.1 NAD(+)--rifampin ADP-ribosyltransferase -
  RKE57_RS19580 (RKE57_19580) - 4257311..4257676 (-) 366 WP_311068763.1 hypothetical protein -
  RKE57_RS19585 (RKE57_19585) - 4257732..4258334 (-) 603 WP_311069237.1 DUF998 domain-containing protein -
  RKE57_RS19590 (RKE57_19590) - 4258984..4259340 (+) 357 WP_159360669.1 hypothetical protein -
  RKE57_RS19595 (RKE57_19595) - 4259386..4259874 (+) 489 WP_010482091.1 hypothetical protein -
  RKE57_RS19600 (RKE57_19600) - 4259942..4260847 (-) 906 WP_010482093.1 Abi family protein -
  RKE57_RS19605 (RKE57_19605) comM 4261294..4262793 (+) 1500 WP_311068764.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RKE57_RS19610 (RKE57_19610) - 4262957..4263622 (+) 666 WP_076739462.1 Abi family protein -
  RKE57_RS19615 (RKE57_19615) - 4263693..4264079 (-) 387 WP_311068765.1 hypothetical protein -
  RKE57_RS19620 (RKE57_19620) - 4264175..4266493 (-) 2319 WP_311068766.1 TonB-dependent receptor -
  RKE57_RS19625 (RKE57_19625) yidA 4266881..4267714 (-) 834 WP_049453999.1 sugar-phosphatase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 53137.88 Da        Isoelectric Point: 7.6683

>NTDB_id=880019 RKE57_RS19605 WP_311068764.1 4261294..4262793(+) (comM) [Stenotrophomonas geniculata strain BR23]
MSLALVHSRARAGVDAPPVRVEVHLSGGLPVTQIVGLAETSVRESRERVRAALLCARFDFPQRRITLNLAPADLPKEGGR
YDLAIALGILAASGQVDPQSLLQYEFLGELGLTGELRPVAGALPAAIAAAEAGRILVVPPGNAAEAALAEHADVRVARTL
LECCAGLGNPRLLPPVERVDTTPLPLPDLADVRGQAHARRALEVAAAGGHHLLLIGSPGCGKTLLASRLPSLLPDTEETE
ALQLAAIASVSGEGLDPRRWRQRPFRAPHHSASAAALVGGGNPPCPGEISLAHHGVLFLDELPEWNRSALETLREPLESG
HIRIARAARSAQYPARFQLVAAMNPCPCGWAGDRSNRCLCSDERINRYRARVSGPLLDRIDLHIGVTRMDAVELRESTPL
GEPSAAVRARVEAAHARQQARGGLNAHLPPAALRACTKLSEADQDLLEQAIERLQLSARAMHRILRVARTIADLAGCEGI
QTAHLAEAIGYRQLDRGNA

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=880019 RKE57_RS19605 WP_311068764.1 4261294..4262793(+) (comM) [Stenotrophomonas geniculata strain BR23]
ATGAGCCTCGCGCTGGTCCACAGCCGTGCCCGCGCCGGGGTCGATGCCCCACCGGTGCGGGTGGAAGTGCATCTCTCTGG
CGGCCTGCCTGTCACCCAGATCGTTGGCCTCGCCGAGACCAGCGTGCGCGAATCCCGCGAGCGCGTCCGTGCCGCCCTGC
TCTGCGCACGCTTCGACTTTCCGCAGCGGCGCATCACGTTGAACCTGGCGCCTGCCGACCTGCCCAAGGAAGGCGGCCGT
TACGACCTCGCCATCGCGCTGGGCATTCTGGCGGCCAGTGGCCAGGTCGATCCGCAGTCGCTGCTGCAGTACGAGTTCCT
GGGCGAGCTGGGCCTGACCGGCGAACTGCGGCCGGTGGCCGGTGCACTACCGGCTGCGATCGCGGCCGCTGAAGCCGGGC
GCATCCTGGTGGTGCCGCCAGGGAATGCCGCAGAGGCTGCGTTGGCCGAGCACGCGGATGTGCGTGTGGCGCGCACGCTG
CTGGAATGCTGCGCCGGGTTGGGCAACCCGCGCCTGTTGCCGCCAGTGGAGCGCGTGGACACGACGCCGTTGCCGCTGCC
GGATCTGGCTGACGTGCGCGGGCAGGCGCACGCACGGCGCGCGTTGGAAGTGGCCGCTGCCGGTGGGCACCATCTGTTGT
TGATCGGTAGTCCTGGCTGCGGCAAGACACTGTTGGCCTCGCGCCTGCCCAGCCTGTTGCCGGATACCGAAGAGACTGAG
GCGCTGCAGCTTGCCGCGATTGCCTCGGTCAGTGGCGAAGGGCTGGACCCAAGACGATGGCGGCAGCGGCCCTTTCGGGC
ACCACATCACAGTGCCAGCGCGGCCGCATTGGTAGGCGGCGGCAATCCACCCTGCCCCGGCGAGATATCGTTGGCCCACC
ACGGTGTCCTTTTCCTCGATGAGCTTCCAGAGTGGAACCGCAGCGCGCTGGAAACCCTGCGCGAGCCACTGGAGTCCGGC
CACATCCGCATCGCCCGCGCGGCGCGCAGCGCGCAGTACCCCGCGCGGTTCCAACTGGTGGCTGCGATGAATCCCTGCCC
GTGCGGCTGGGCCGGTGACCGCAGCAACCGTTGCCTGTGCAGCGACGAGCGGATCAACCGCTACCGTGCGCGGGTGTCCG
GTCCGTTGCTGGACCGCATCGATCTGCATATCGGCGTAACGCGAATGGACGCGGTGGAGCTGCGGGAGAGCACGCCACTG
GGTGAACCCAGTGCTGCGGTACGTGCACGGGTGGAAGCCGCCCATGCCCGGCAGCAGGCACGTGGCGGGCTCAATGCACA
TCTGCCGCCGGCGGCGCTGCGGGCGTGCACGAAGCTGAGCGAGGCCGATCAGGATCTGTTGGAGCAGGCCATCGAGCGCC
TGCAGCTTTCCGCACGGGCGATGCACCGGATTCTGCGGGTGGCGCGCACGATTGCGGATCTGGCGGGTTGCGAGGGTATC
CAGACCGCGCATCTGGCTGAGGCGATTGGCTATCGGCAGTTGGATCGGGGAAATGCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.28

100

0.537
  comM Glaesserella parasuis strain SC1401

52.883

100

0.533
  comM Haemophilus influenzae Rd KW20

51.69

100

0.521
  comM Vibrio campbellii strain DS40M4

51.703

100

0.517
  comM Legionella pneumophila str. Paris

50.803

99.8

0.507
  comM Legionella pneumophila strain ERS1305867

50.803

99.8

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.902

100

0.459