Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RIN58_RS19530 Genome accession   NZ_CP134402
Coordinates   4105687..4107207 (+) Length   506 a.a.
NCBI ID   WP_313796665.1    Uniprot ID   -
Organism   Siccibacter colletis strain 3.2.4     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4100687..4112207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN58_RS19510 (RIN58_19510) - 4102235..4103164 (-) 930 WP_031523792.1 branched-chain amino acid transaminase -
  RIN58_RS19515 (RIN58_19515) ilvM 4103182..4103445 (-) 264 WP_031523794.1 acetolactate synthase 2 small subunit -
  RIN58_RS19520 (RIN58_19520) ilvG 4103442..4105091 (-) 1650 WP_313796664.1 acetolactate synthase 2 catalytic subunit -
  RIN58_RS19525 (RIN58_19525) ilvL 4105231..4105329 (-) 99 WP_072002048.1 ilv operon leader peptide -
  RIN58_RS19530 (RIN58_19530) comM 4105687..4107207 (+) 1521 WP_313796665.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RIN58_RS19535 (RIN58_19535) - 4107232..4107570 (-) 339 WP_031523799.1 DUF413 domain-containing protein -
  RIN58_RS19540 (RIN58_19540) hdfR 4107690..4108514 (+) 825 WP_264385086.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54748.22 Da        Isoelectric Point: 7.2281

>NTDB_id=879979 RIN58_RS19530 WP_313796665.1 4105687..4107207(+) (comM) [Siccibacter colletis strain 3.2.4]
MSLAIVFTRAALGVTAPLVTVEVHMSAGLPGLTIVGLPETTVKEARDRVRSAIINSGYEFPARKITINLAPADLPKEGGR
YDLPIAVALLAASEQLSTSLLSQTEFVGELALTGALRGVPGAISCAMEALQQQRQIVVAQENASELGLIDKPGCMVAAHL
LEVCAFLEGKGSLEQPVSPALSTEACCEDINEVYGQQQGKRALEIAAAGGHNLLFIGPPGTGKTMLASRLNGILPPLSDE
EALESAAIMSLVNPVALQRQWRQRPFRAPHHSASLTALVGGGAIPMPGEISLAHNGVLFLDELPEFERRALDALREPVES
GKIHISRTRAKVSYPARFQLIAAMNPSPTGHYQGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLLPPGMLSKPGDGG
ESSAEIRSRVTRVRSTQLARQQCLNALLNNAGIKQFCRLEAADAEWLEETLIRLGLSVRAWQRLLKVARTIADLNLEGDI
RRPHLQEALSYRAIDRMLLHLQKMMT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=879979 RIN58_RS19530 WP_313796665.1 4105687..4107207(+) (comM) [Siccibacter colletis strain 3.2.4]
ATGTCTCTCGCCATTGTGTTTACCAGAGCTGCGTTGGGCGTAACGGCCCCACTGGTTACCGTTGAAGTACATATGAGTGC
AGGTTTGCCGGGCCTGACTATTGTTGGCCTGCCTGAGACTACTGTGAAGGAAGCGCGCGATCGTGTGCGTAGCGCAATTA
TCAACAGTGGTTATGAGTTTCCGGCCCGGAAAATAACTATCAATCTTGCGCCAGCCGATTTACCTAAAGAGGGCGGGCGT
TACGATTTACCCATTGCTGTAGCGTTACTGGCCGCCTCGGAGCAGCTCAGCACCTCACTGTTAAGCCAGACAGAGTTTGT
CGGTGAACTGGCGCTTACCGGCGCATTGCGCGGCGTTCCCGGTGCGATCTCATGTGCCATGGAGGCACTCCAGCAACAGC
GGCAGATCGTTGTCGCTCAGGAAAACGCATCGGAACTGGGCCTGATTGATAAACCCGGTTGTATGGTTGCAGCACACCTG
CTGGAGGTATGCGCGTTTCTTGAAGGCAAAGGTTCGCTTGAGCAGCCGGTTTCCCCAGCGCTAAGCACAGAAGCGTGTTG
CGAAGACATCAATGAGGTATACGGGCAACAACAGGGCAAGCGAGCCCTGGAGATTGCAGCCGCTGGCGGCCACAACCTGC
TCTTCATTGGCCCTCCCGGCACCGGAAAAACAATGCTGGCGAGTCGGCTTAACGGGATCTTGCCACCATTGAGCGATGAA
GAGGCGCTTGAGAGCGCCGCTATTATGAGCCTGGTGAATCCGGTAGCGTTACAGCGGCAATGGCGTCAGCGGCCATTCAG
AGCACCTCACCACAGCGCATCGTTGACGGCTCTGGTAGGCGGAGGGGCAATTCCCATGCCTGGAGAGATTTCACTGGCGC
ACAATGGCGTGCTGTTTCTGGATGAATTACCGGAGTTTGAGCGTCGGGCTTTGGATGCATTAAGAGAGCCCGTCGAGTCA
GGGAAAATTCATATTTCACGCACTCGCGCAAAAGTCAGCTATCCCGCGCGCTTCCAACTCATTGCCGCAATGAATCCCAG
TCCAACCGGGCACTATCAGGGAAATCATAATCGTTGCAGCCCTGAACAGACCCTGCGTTACCTTGGGCGTCTGTCCGGAC
CCTTTTTGGATCGGTTCGATTTATCCCTTGAGATCCCTCTGCTACCGCCTGGGATGTTAAGTAAGCCGGGTGACGGGGGG
GAAAGTAGCGCTGAAATCAGGTCGCGGGTAACAAGGGTCCGTTCAACGCAACTTGCGCGCCAGCAGTGCCTTAATGCTTT
GCTCAATAATGCCGGAATCAAGCAATTCTGTCGCCTTGAAGCAGCCGACGCCGAGTGGCTGGAAGAGACGCTCATCCGTC
TTGGATTATCAGTCAGAGCCTGGCAGCGATTACTTAAGGTAGCGCGTACTATTGCAGATCTTAATCTGGAAGGTGATATA
CGTCGCCCTCACCTGCAGGAAGCGCTGAGTTACCGCGCGATTGACAGAATGCTGCTCCACCTGCAAAAGATGATGACGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.883

100

0.605
  comM Vibrio cholerae strain A1552

60.757

99.209

0.603
  comM Glaesserella parasuis strain SC1401

59.332

100

0.597
  comM Vibrio campbellii strain DS40M4

59.562

99.209

0.591
  comM Legionella pneumophila str. Paris

50.503

98.221

0.496
  comM Legionella pneumophila strain ERS1305867

50.503

98.221

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.998

100

0.431