Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RIN58_RS17985 Genome accession   NZ_CP134402
Coordinates   3779759..3780301 (-) Length   180 a.a.
NCBI ID   WP_031521413.1    Uniprot ID   -
Organism   Siccibacter colletis strain 3.2.4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3774759..3785301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN58_RS17960 (RIN58_17960) - 3775678..3776346 (-) 669 WP_313796488.1 glutathione S-transferase -
  RIN58_RS17965 (RIN58_17965) soxR 3776450..3776905 (-) 456 WP_031521419.1 redox-sensitive transcriptional activator SoxR -
  RIN58_RS17970 (RIN58_17970) soxS 3776990..3777313 (+) 324 WP_031521418.1 superoxide response transcriptional regulator SoxS -
  RIN58_RS17975 (RIN58_17975) - 3777322..3778911 (-) 1590 WP_313796489.1 EAL domain-containing protein -
  RIN58_RS17980 (RIN58_17980) - 3779380..3779655 (+) 276 WP_031521414.1 YjcB family protein -
  RIN58_RS17985 (RIN58_17985) ssb 3779759..3780301 (-) 543 WP_031521413.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RIN58_RS17990 (RIN58_17990) uvrA 3780612..3783440 (+) 2829 WP_031521411.1 excinuclease ABC subunit UvrA -
  RIN58_RS17995 (RIN58_17995) - 3783586..3783939 (-) 354 WP_031521409.1 MmcQ/YjbR family DNA-binding protein -
  RIN58_RS18000 (RIN58_18000) - 3783936..3784358 (-) 423 WP_313796490.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19193.20 Da        Isoelectric Point: 5.2456

>NTDB_id=879975 RIN58_RS17985 WP_031521413.1 3779759..3780301(-) (ssb) [Siccibacter colletis strain 3.2.4]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGMGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQ
NNAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=879975 RIN58_RS17985 WP_031521413.1 3779759..3780301(-) (ssb) [Siccibacter colletis strain 3.2.4]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGGAATCTGGGTCAGGACCCGGAAGTGCGCTATATGCCTAATGG
TGGCGCAGTTGCCAACATTACCCTGGCCACGTCAGAGTCATGGCGCGACAAGCAAACCGGCGAAACCAAAGAGAAAACCG
AATGGCACCGCGTTGTGCTGTTCGGCAAGCTGGCTGAAGTAGCCGGTGAATACCTGCGCAAAGGTTCTCAGGTGTATATC
GAAGGTTCCCTGCAGACCCGCAAATGGACCGACCAGGCCGGTGTTGAGAAGTACACCACTGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGTGCACCGGCTGGCGGCGGCATGGGCGGCGGTCAGCAGCAGC
AGGGCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCACAGCAGCAG
AACAATGCCCCGGCGCAGTCTAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.176

100

0.75
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.578
  ssb Neisseria meningitidis MC58

46.703

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.703

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.367