Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RJD40_RS13005 Genome accession   NZ_CP134280
Coordinates   2883086..2884309 (+) Length   407 a.a.
NCBI ID   WP_065430955.1    Uniprot ID   -
Organism   Vibrio scophthalmi strain 21FBVib0106     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2878086..2889309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD40_RS12995 (RJD40_12995) pilA 2880892..2881350 (+) 459 WP_065430953.1 pilin Machinery gene
  RJD40_RS13000 (RJD40_13000) pilB 2881350..2883032 (+) 1683 WP_418113554.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RJD40_RS13005 (RJD40_13005) pilC 2883086..2884309 (+) 1224 WP_065430955.1 type II secretion system F family protein Machinery gene
  RJD40_RS13010 (RJD40_13010) pilD 2884415..2885284 (+) 870 WP_005593978.1 prepilin peptidase Machinery gene
  RJD40_RS13015 (RJD40_13015) coaE 2885289..2885897 (+) 609 WP_005593977.1 dephospho-CoA kinase -
  RJD40_RS13020 (RJD40_13020) zapD 2885932..2886672 (+) 741 WP_005593976.1 cell division protein ZapD -
  RJD40_RS13025 (RJD40_13025) yacG 2886748..2886942 (+) 195 WP_005593974.1 DNA gyrase inhibitor YacG -
  RJD40_RS13030 (RJD40_13030) rplS 2887239..2887592 (-) 354 WP_005593972.1 50S ribosomal protein L19 -
  RJD40_RS13035 (RJD40_13035) trmD 2887642..2888391 (-) 750 WP_009387605.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RJD40_RS13040 (RJD40_13040) rimM 2888419..2888973 (-) 555 WP_005593970.1 ribosome maturation factor RimM -
  RJD40_RS13045 (RJD40_13045) rpsP 2888998..2889246 (-) 249 WP_005593968.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45526.73 Da        Isoelectric Point: 10.2692

>NTDB_id=879652 RJD40_RS13005 WP_065430955.1 2883086..2884309(+) (pilC) [Vibrio scophthalmi strain 21FBVib0106]
MNKKSQHRLKIYRWKGTNSVGRRVTGKYLAFRESDVRQRLKQQKIRINQLTSHKLSWLQRQLETVKPKEITLLTRQLATI
LDTGIPLVQALKLVNDNSKKSGMLALLLTITSQVEAGLPLSQALKATHQFDSLYIDLVATGEATGQLNQVFSRIAEHREK
SEHLKAKVIKAMIYPSIVLLTALAVSWVMLTIVIPEFDSMFQSFGAELPWFTQQVLSLSYFAREQGGTIAISMVSSLLLC
KWAQARSSRCRIYLSRTSLRLPLIGPIISKAAIAKFSRTMATSFSAGIPILSCLKSAAKTTNQLYYQAALERVLKDTAAG
MPFYLAMRDSDTFPEMPLQMLMIGEEAGKLDEMLIKIATIYEKEIDDTVDNLGKIIEPAIIIFLSIVVGSLVIAIYLPIF
NLMNVIG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=879652 RJD40_RS13005 WP_065430955.1 2883086..2884309(+) (pilC) [Vibrio scophthalmi strain 21FBVib0106]
ATGAATAAAAAATCACAGCACCGGTTGAAAATCTATCGCTGGAAGGGAACCAACTCTGTGGGTCGGCGTGTCACGGGTAA
ATACTTGGCATTCCGTGAGAGCGATGTTCGTCAGCGATTAAAGCAACAAAAGATCCGCATCAATCAGTTAACCTCACACA
AACTTTCTTGGCTTCAGCGCCAACTCGAAACGGTTAAGCCCAAAGAGATCACCTTACTTACCCGCCAATTAGCCACCATT
CTCGATACTGGAATTCCGCTCGTTCAAGCGCTCAAACTGGTCAACGACAACAGCAAAAAATCCGGAATGCTCGCCCTACT
CCTAACGATAACCAGCCAAGTTGAAGCAGGCCTTCCTCTCAGCCAAGCCTTAAAAGCAACGCATCAGTTTGATTCTCTTT
ATATCGATCTTGTCGCGACGGGGGAAGCGACAGGACAGCTCAACCAAGTGTTTTCCCGTATCGCTGAACACCGTGAAAAA
TCTGAGCACCTCAAAGCCAAAGTAATCAAAGCAATGATCTACCCTTCTATCGTTTTACTCACCGCTTTGGCCGTCAGTTG
GGTAATGTTAACCATCGTCATTCCTGAATTTGATAGTATGTTCCAAAGCTTTGGCGCTGAACTGCCTTGGTTTACTCAAC
AAGTATTATCGCTGTCCTACTTTGCTCGTGAACAGGGCGGAACGATCGCCATAAGCATGGTCAGTTCTCTACTGCTCTGC
AAATGGGCTCAAGCACGTTCGTCTCGCTGCCGGATCTACTTGAGCCGAACCAGTTTGCGCCTCCCTCTCATCGGCCCAAT
CATCAGTAAGGCGGCAATCGCTAAGTTCAGTCGCACCATGGCCACCAGCTTTTCGGCTGGCATTCCAATATTGTCTTGTT
TGAAATCAGCCGCGAAAACCACCAATCAGCTCTATTACCAAGCGGCTCTTGAACGAGTGCTAAAAGATACCGCAGCAGGC
ATGCCGTTTTATCTCGCCATGCGCGACAGCGATACTTTTCCTGAAATGCCATTGCAAATGCTGATGATTGGCGAAGAGGC
AGGTAAGCTTGATGAGATGCTGATTAAGATCGCGACCATCTATGAAAAAGAAATCGATGACACCGTTGATAACCTTGGCA
AAATCATTGAACCGGCCATTATCATTTTTCTCAGTATCGTGGTCGGTAGCCTCGTTATCGCTATCTACTTACCAATATTT
AATTTAATGAACGTTATAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

57.75

98.28

0.568
  pilC Vibrio campbellii strain DS40M4

57.357

98.526

0.565
  pilC Acinetobacter baylyi ADP1

37.99

100

0.381
  pilC Acinetobacter baumannii D1279779

37.255

100

0.373