Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJD40_RS02030 Genome accession   NZ_CP134280
Coordinates   414680..415219 (+) Length   179 a.a.
NCBI ID   WP_005593087.1    Uniprot ID   F9RB03
Organism   Vibrio scophthalmi strain 21FBVib0106     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 409680..420219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD40_RS02015 (RJD40_02020) uvrA 409737..412559 (-) 2823 WP_418113862.1 excinuclease ABC subunit UvrA -
  RJD40_RS02020 (RJD40_02025) galU 412743..413615 (-) 873 WP_418113863.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RJD40_RS02025 (RJD40_02030) qstR 413734..414381 (-) 648 WP_005593085.1 LuxR C-terminal-related transcriptional regulator Regulator
  RJD40_RS02030 (RJD40_02035) ssb 414680..415219 (+) 540 WP_005593087.1 single-stranded DNA-binding protein Machinery gene
  RJD40_RS02035 (RJD40_02040) csrD 415390..417396 (+) 2007 WP_418113864.1 RNase E specificity factor CsrD -
  RJD40_RS02040 (RJD40_02045) - 417404..418846 (+) 1443 WP_418113865.1 MSHA biogenesis protein MshI -
  RJD40_RS02045 (RJD40_02050) pilO 418843..419493 (+) 651 WP_418113866.1 type 4a pilus biogenesis protein PilO -
  RJD40_RS02050 (RJD40_02055) - 419501..419824 (+) 324 WP_040757806.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19964.07 Da        Isoelectric Point: 5.1976

>NTDB_id=879631 RJD40_RS02030 WP_005593087.1 414680..415219(+) (ssb) [Vibrio scophthalmi strain 21FBVib0106]
MASRGVNKVILVGNLGADPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGVMQMLGGRQGGQGAPMGGQPQQQQQPQQGWGQPQQPAMQQQSHQPQQQQPQ
QQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=879631 RJD40_RS02030 WP_005593087.1 414680..415219(+) (ssb) [Vibrio scophthalmi strain 21FBVib0106]
ATGGCTAGCCGTGGAGTAAACAAAGTAATCTTGGTCGGTAACTTGGGCGCAGATCCTGAAGTCCGTTACATGCCTAGTGG
CGGTGCAGTAGCAAATATTACTGTGGCTACTTCTGAGTCATGGCGTGATAAAGCTACCGGTGAACAGCGTGAAAAAACAG
AGTGGCACCGTGTTGCTCTGTTTGGAAAATTAGCAGAAGTGGCTGGTGAGTACCTACGCAAAGGCTCTCAAGTTTACATT
GAAGGTCAACTGCAAACACGTAAATGGCAAAACCAACAAGGCCAAGATCAGTACACAACGGAAGTTGTGGTACAAGGCTT
TAATGGTGTGATGCAAATGCTAGGCGGTCGTCAAGGCGGTCAAGGTGCACCAATGGGTGGTCAACCTCAACAGCAACAGC
AACCGCAGCAAGGTTGGGGTCAGCCACAACAACCTGCAATGCAGCAGCAATCGCATCAGCCACAACAGCAGCAACCTCAG
CAACAACAGCCTCAATATAATGAGCCACCAATGGATTTTGACGACGACATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9RB03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

78.378

100

0.81
  ssb Glaesserella parasuis strain SC1401

53.846

100

0.547
  ssb Neisseria meningitidis MC58

47.191

99.441

0.469
  ssb Neisseria gonorrhoeae MS11

47.191

99.441

0.469