Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   RJD40_RS02025 Genome accession   NZ_CP134280
Coordinates   413734..414381 (-) Length   215 a.a.
NCBI ID   WP_005593085.1    Uniprot ID   A0A1B1NL12
Organism   Vibrio scophthalmi strain 21FBVib0106     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 408734..419381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD40_RS02015 (RJD40_02020) uvrA 409737..412559 (-) 2823 WP_418113862.1 excinuclease ABC subunit UvrA -
  RJD40_RS02020 (RJD40_02025) galU 412743..413615 (-) 873 WP_418113863.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RJD40_RS02025 (RJD40_02030) qstR 413734..414381 (-) 648 WP_005593085.1 LuxR C-terminal-related transcriptional regulator Regulator
  RJD40_RS02030 (RJD40_02035) ssb 414680..415219 (+) 540 WP_005593087.1 single-stranded DNA-binding protein Machinery gene
  RJD40_RS02035 (RJD40_02040) csrD 415390..417396 (+) 2007 WP_418113864.1 RNase E specificity factor CsrD -
  RJD40_RS02040 (RJD40_02045) - 417404..418846 (+) 1443 WP_418113865.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25017.80 Da        Isoelectric Point: 9.2851

>NTDB_id=879630 RJD40_RS02025 WP_005593085.1 413734..414381(-) (qstR) [Vibrio scophthalmi strain 21FBVib0106]
MAKNIYTRTIYFLCENKHAHYPIVDRIEATLGLPIPRMEPQDCMLAMQQHKHKILLIDHNNYQTLNSTIRNLPLSNKIFE
TIIFNVERRLTTDELLSFGNLKALFYRNDDLNDVAFGCGEVINSHNWLPRKVAAQLLHYYRHIFDSQTSPATVDLTTREI
QILRSLKTGASNNQIAEDLFISEFTVKSHLYQIFKKLSVKNRVQATSWAKQHLMS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=879630 RJD40_RS02025 WP_005593085.1 413734..414381(-) (qstR) [Vibrio scophthalmi strain 21FBVib0106]
ATGGCTAAGAACATCTACACTAGAACCATCTATTTCCTATGTGAAAATAAACACGCTCACTATCCAATTGTAGATCGTAT
TGAAGCAACCCTCGGCTTACCGATACCGCGAATGGAACCGCAAGACTGTATGCTCGCCATGCAGCAACACAAACATAAAA
TTCTGCTGATCGACCATAACAACTACCAGACATTAAATAGCACCATTCGCAACTTGCCGTTATCGAATAAAATATTTGAA
ACGATTATTTTTAATGTCGAGAGACGTCTCACGACTGACGAGCTACTCAGCTTTGGTAATTTAAAAGCGCTTTTTTATCG
CAACGATGACCTCAATGACGTTGCATTTGGCTGTGGTGAAGTGATCAATAGCCATAATTGGCTGCCAAGAAAAGTCGCCG
CACAACTATTACATTACTATCGCCATATCTTTGATAGCCAAACCTCACCAGCCACCGTTGACCTAACCACTCGTGAGATC
CAGATTTTACGCAGCTTAAAAACTGGCGCGTCAAATAATCAAATTGCAGAAGACCTCTTTATTAGTGAATTTACCGTCAA
GTCCCACCTATACCAAATATTCAAAAAACTCTCGGTAAAGAACCGCGTGCAGGCAACTTCTTGGGCAAAACAGCACTTAA
TGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1NL12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

56.542

99.535

0.563
  qstR Vibrio campbellii strain DS40M4

54.419

100

0.544
  qstR Vibrio parahaemolyticus RIMD 2210633

53.488

100

0.535