Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RJD40_RS00155 Genome accession   NZ_CP134280
Coordinates   40715..42238 (+) Length   507 a.a.
NCBI ID   WP_418113682.1    Uniprot ID   -
Organism   Vibrio scophthalmi strain 21FBVib0106     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 35715..47238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD40_RS00140 (RJD40_00140) - 37323..38267 (-) 945 WP_065429601.1 branched-chain amino acid transaminase -
  RJD40_RS00145 (RJD40_00145) ilvM 38281..38565 (-) 285 WP_005597332.1 acetolactate synthase 2 small subunit -
  RJD40_RS00150 (RJD40_00150) ilvG 38567..40213 (-) 1647 WP_418113681.1 acetolactate synthase 2 catalytic subunit -
  RJD40_RS00155 (RJD40_00155) comM 40715..42238 (+) 1524 WP_418113682.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RJD40_RS00160 (RJD40_00160) - 42370..43701 (+) 1332 WP_005593006.1 IS4 family transposase -
  RJD40_RS00165 (RJD40_00165) - 43752..44741 (-) 990 WP_418113683.1 DUF2860 domain-containing protein -
  RJD40_RS00170 (RJD40_00170) - 45294..45896 (-) 603 WP_005597338.1 thiol:disulfide interchange protein DsbA/DsbL -
  RJD40_RS00175 (RJD40_00175) - 45929..46915 (-) 987 WP_418113684.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54939.82 Da        Isoelectric Point: 7.8892

>NTDB_id=879621 RJD40_RS00155 WP_418113682.1 40715..42238(+) (comM) [Vibrio scophthalmi strain 21FBVib0106]
MGLAVVYSRASVGVEAPLVTVEVHISNGMPGFALVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASQQIPLNPLTQSEFIGELALSGELRAVKGVLPAALIAQQQGRRLVVPHCNGDQAALVGKEKHKSAQSL
LEVCADLCGQQALALHQTDTQPHIATHARDLRDIIGQQQGKRALEIAAAGHHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEALESASVASLTQQEINQFNWKCRSFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDALREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPSGHYDAKQSHGNSQAALRYLSRLSGPLLDRFDMSLEIPALPQGTLAEGGER
GEATEVVKARVEKAREEMLARSGKANALLGSREIDQYCHLDRSDAQFLEQALHRLGLSVRAYHRIIKVARTIADLAGEAQ
ISRAHLSEALGYRAMDRLMRHLHAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=879621 RJD40_RS00155 WP_418113682.1 40715..42238(+) (comM) [Vibrio scophthalmi strain 21FBVib0106]
ATGGGTTTAGCTGTGGTATACAGCCGCGCATCGGTAGGCGTGGAGGCACCGTTGGTGACGGTTGAGGTGCACATTAGTAA
TGGCATGCCGGGTTTTGCGCTGGTGGGTTTGCCAGAGACAACGGTGAAGGAGTCTCGTGATCGCGTGCGCAGCGCGATCA
TTAACTCGCGTTTTGAGTTTCCGGCCAAGCGGATTACGGTCAATTTAGCGCCCGCCGATTTACCCAAAGAAGGTGGCCGT
TTTGATTTGCCAATTGCGTTAGGCATCTTAGCGGCTTCACAGCAAATTCCACTCAATCCACTCACTCAAAGTGAGTTTAT
TGGTGAACTGGCATTATCAGGGGAATTGCGAGCGGTGAAAGGCGTGTTGCCCGCGGCACTGATCGCGCAGCAACAAGGAC
GCCGTTTGGTGGTCCCCCATTGCAATGGTGACCAAGCCGCATTGGTGGGTAAAGAAAAACATAAATCAGCACAAAGCTTG
CTTGAGGTGTGCGCCGACCTGTGTGGTCAACAAGCATTAGCCTTGCACCAAACCGATACGCAGCCACATATCGCCACTCA
TGCGCGAGATCTGCGTGACATCATTGGTCAGCAGCAAGGTAAGCGTGCGCTGGAAATCGCTGCCGCGGGTCATCATAACT
TGTTGTTTCTTGGCCCTCCGGGCACCGGTAAAACCATGCTCGCTTCACGCCTGCGCGATTTGCTGCCAGAAATGTCGGAT
GATGAAGCGTTAGAGTCAGCCTCGGTGGCTTCGCTGACCCAGCAAGAAATCAATCAATTTAACTGGAAATGTCGGTCATT
TCGCTCGCCGCACCACTCCAGTTCAATGGCTGCACTGGTCGGTGGTGGCTCGGTTCCTAGGCCGGGGGAGATTTCTTTGG
CGCATAATGGGCTGTTATTTCTCGATGAGATGCCTGAGTTTGAACGTAAAGTTTTAGATGCATTACGTGAGCCGCTGGAA
TCTGGTGAGATTATTATTTCCCGTGCGCAAGGCAAAACTCGTTTTCCTGCGCGCTTTCAGTTAGTCGGAGCGCTTAATCC
AAGCCCGAGTGGTCATTATGATGCCAAGCAAAGTCATGGTAATTCTCAGGCGGCACTGCGTTATTTGAGTCGTTTGTCAG
GGCCGTTGTTGGATCGTTTTGATATGTCGTTAGAAATCCCAGCCTTGCCACAAGGGACATTGGCCGAAGGTGGTGAGCGA
GGAGAAGCGACTGAGGTGGTGAAAGCCCGCGTGGAAAAAGCTCGCGAGGAGATGCTTGCTCGGAGTGGTAAAGCTAATGC
TCTGTTGGGCAGTCGAGAGATCGATCAATACTGCCACCTTGATAGAAGTGATGCGCAATTTTTAGAGCAAGCGTTGCATC
GTTTAGGCTTATCGGTTCGCGCCTATCATCGCATCATTAAAGTGGCGCGCACCATTGCTGACTTGGCTGGTGAAGCGCAG
ATTTCTCGAGCGCACTTATCCGAAGCGTTAGGTTATCGCGCGATGGATCGATTGATGCGCCATTTACACGCACAAGCGGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

81.262

100

0.813
  comM Vibrio campbellii strain DS40M4

80.079

100

0.801
  comM Haemophilus influenzae Rd KW20

64.032

99.803

0.639
  comM Glaesserella parasuis strain SC1401

63.209

100

0.637
  comM Legionella pneumophila str. Paris

49.206

99.408

0.489
  comM Legionella pneumophila strain ERS1305867

49.206

99.408

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.442