Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJD39_RS14500 Genome accession   NZ_CP134277
Coordinates   3079497..3080027 (+) Length   176 a.a.
NCBI ID   WP_406732571.1    Uniprot ID   -
Organism   Vibrio scophthalmi strain 21FBVib0096     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3074497..3085027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD39_RS14485 (RJD39_14465) uvrA 3074554..3077376 (-) 2823 WP_406732570.1 excinuclease ABC subunit UvrA -
  RJD39_RS14490 (RJD39_14470) galU 3077560..3078432 (-) 873 WP_009385818.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RJD39_RS14495 (RJD39_14475) qstR 3078551..3079198 (-) 648 WP_005593085.1 LuxR C-terminal-related transcriptional regulator Regulator
  RJD39_RS14500 (RJD39_14480) ssb 3079497..3080027 (+) 531 WP_406732571.1 single-stranded DNA-binding protein Machinery gene
  RJD39_RS14505 (RJD39_14485) csrD 3080198..3082204 (+) 2007 WP_406732572.1 RNase E specificity factor CsrD -
  RJD39_RS14510 (RJD39_14490) - 3082212..3083654 (+) 1443 WP_406732574.1 MSHA biogenesis protein MshI -
  RJD39_RS14515 (RJD39_14495) pilO 3083651..3084301 (+) 651 WP_069445978.1 type 4a pilus biogenesis protein PilO -
  RJD39_RS14520 (RJD39_14500) - 3084309..3084632 (+) 324 WP_406734097.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19610.69 Da        Isoelectric Point: 5.1976

>NTDB_id=879617 RJD39_RS14500 WP_406732571.1 3079497..3080027(+) (ssb) [Vibrio scophthalmi strain 21FBVib0096]
MASRGVNKVILVGNLGADPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGVMQMLGGRQGGQGAPMGGQPQQQQQQPQQGWGQPQQPAMQQQSHQQPQQQQ
PQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=879617 RJD39_RS14500 WP_406732571.1 3079497..3080027(+) (ssb) [Vibrio scophthalmi strain 21FBVib0096]
ATGGCTAGCCGTGGAGTAAACAAAGTAATCTTGGTCGGTAACTTGGGCGCAGATCCTGAAGTCCGTTACATGCCTAGTGG
CGGTGCAGTAGCAAATATTACTGTGGCTACTTCTGAGTCATGGCGTGATAAAGCTACCGGTGAACAGCGTGAAAAAACAG
AGTGGCACCGTGTTGCTCTGTTTGGAAAATTAGCAGAAGTGGCTGGTGAGTACCTACGCAAAGGCTCTCAAGTTTACATT
GAAGGTCAACTGCAAACGCGTAAATGGCAAAACCAACAAGGCCAAGATCAGTACACAACGGAAGTTGTGGTACAAGGCTT
TAATGGTGTGATGCAAATGCTAGGCGGTCGTCAAGGCGGTCAAGGTGCACCAATGGGTGGTCAACCTCAGCAGCAGCAAC
AGCAACCGCAGCAAGGTTGGGGTCAGCCACAACAACCTGCAATGCAGCAGCAATCGCACCAGCAACCTCAGCAACAACAG
CCTCAATATAATGAGCCACCAATGGATTTTGACGACGACATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.121

100

0.818
  ssb Glaesserella parasuis strain SC1401

54.098

100

0.562
  ssb Neisseria meningitidis MC58

47.222

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.222

100

0.483