Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   RJD39_RS14495 Genome accession   NZ_CP134277
Coordinates   3078551..3079198 (-) Length   215 a.a.
NCBI ID   WP_005593085.1    Uniprot ID   A0A1B1NL12
Organism   Vibrio scophthalmi strain 21FBVib0096     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3073551..3084198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD39_RS14485 (RJD39_14465) uvrA 3074554..3077376 (-) 2823 WP_406732570.1 excinuclease ABC subunit UvrA -
  RJD39_RS14490 (RJD39_14470) galU 3077560..3078432 (-) 873 WP_009385818.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RJD39_RS14495 (RJD39_14475) qstR 3078551..3079198 (-) 648 WP_005593085.1 LuxR C-terminal-related transcriptional regulator Regulator
  RJD39_RS14500 (RJD39_14480) ssb 3079497..3080027 (+) 531 WP_406732571.1 single-stranded DNA-binding protein Machinery gene
  RJD39_RS14505 (RJD39_14485) csrD 3080198..3082204 (+) 2007 WP_406732572.1 RNase E specificity factor CsrD -
  RJD39_RS14510 (RJD39_14490) - 3082212..3083654 (+) 1443 WP_406732574.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25017.80 Da        Isoelectric Point: 9.2851

>NTDB_id=879616 RJD39_RS14495 WP_005593085.1 3078551..3079198(-) (qstR) [Vibrio scophthalmi strain 21FBVib0096]
MAKNIYTRTIYFLCENKHAHYPIVDRIEATLGLPIPRMEPQDCMLAMQQHKHKILLIDHNNYQTLNSTIRNLPLSNKIFE
TIIFNVERRLTTDELLSFGNLKALFYRNDDLNDVAFGCGEVINSHNWLPRKVAAQLLHYYRHIFDSQTSPATVDLTTREI
QILRSLKTGASNNQIAEDLFISEFTVKSHLYQIFKKLSVKNRVQATSWAKQHLMS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=879616 RJD39_RS14495 WP_005593085.1 3078551..3079198(-) (qstR) [Vibrio scophthalmi strain 21FBVib0096]
ATGGCTAAGAACATCTACACTAGAACCATCTATTTCCTATGTGAAAATAAACACGCTCACTATCCAATTGTAGATCGTAT
TGAAGCAACCCTCGGCTTACCGATACCGCGTATGGAACCGCAAGACTGTATGCTCGCCATGCAGCAACACAAACATAAAA
TTCTGTTGATCGACCATAACAACTACCAGACGTTAAATAGCACCATTCGCAACCTGCCGTTATCGAATAAAATATTTGAA
ACGATTATTTTTAATGTCGAGAGGCGTCTCACGACTGACGAGCTACTCAGCTTTGGTAATTTAAAAGCGCTTTTTTATCG
CAACGATGATCTCAATGACGTTGCATTTGGCTGTGGTGAAGTGATCAATAGCCATAATTGGCTGCCAAGAAAAGTCGCCG
CACAACTATTACATTACTATCGCCATATCTTTGATAGCCAAACCTCACCAGCCACCGTTGACCTAACCACTCGTGAGATC
CAGATTTTACGTAGTTTAAAAACTGGCGCATCGAATAATCAAATTGCAGAAGACCTCTTTATTAGTGAATTTACCGTCAA
GTCCCACCTATACCAAATCTTCAAAAAACTCTCGGTAAAGAATCGAGTGCAAGCGACCTCTTGGGCAAAACAGCACTTAA
TGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1NL12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

56.542

99.535

0.563
  qstR Vibrio campbellii strain DS40M4

54.419

100

0.544
  qstR Vibrio parahaemolyticus RIMD 2210633

53.488

100

0.535