Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RJD39_RS02085 Genome accession   NZ_CP134277
Coordinates   389674..389988 (+) Length   104 a.a.
NCBI ID   WP_406732951.1    Uniprot ID   -
Organism   Vibrio scophthalmi strain 21FBVib0096     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 384674..394988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD39_RS02070 (RJD39_02070) lon 384688..387039 (+) 2352 WP_406732949.1 endopeptidase La -
  RJD39_RS02075 (RJD39_02075) - 387221..387505 (+) 285 Protein_395 HU family DNA-binding protein -
  RJD39_RS02080 (RJD39_02080) ppiD 387677..389536 (+) 1860 WP_406732950.1 peptidylprolyl isomerase -
  RJD39_RS02085 (RJD39_02085) comEA 389674..389988 (+) 315 WP_406732951.1 ComEA family DNA-binding protein Machinery gene
  RJD39_RS02090 (RJD39_02090) cmk 390268..390948 (+) 681 WP_005595886.1 (d)CMP kinase -
  RJD39_RS02095 (RJD39_02095) rpsA 391057..392727 (+) 1671 WP_005595887.1 30S ribosomal protein S1 -
  RJD39_RS02100 (RJD39_02100) ihfB 392930..393211 (+) 282 WP_005595888.1 integration host factor subunit beta -
  RJD39_RS02105 (RJD39_02105) - 393345..393623 (+) 279 WP_005595889.1 LapA family protein -
  RJD39_RS02110 (RJD39_02110) lapB 393649..394818 (+) 1170 WP_009388068.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11160.82 Da        Isoelectric Point: 4.5557

>NTDB_id=879587 RJD39_RS02085 WP_406732951.1 389674..389988(+) (comEA) [Vibrio scophthalmi strain 21FBVib0096]
MNVKALVLSVVLTFSLPFTAVLAEQQPDSPPENPKYDGIEIVVNVNQASAQEIADLLKGIGLTKAQAIVDYRDQQGPFKR
IEDLAKVSGVGEATVAKNVGRIEL

Nucleotide


Download         Length: 315 bp        

>NTDB_id=879587 RJD39_RS02085 WP_406732951.1 389674..389988(+) (comEA) [Vibrio scophthalmi strain 21FBVib0096]
ATGAATGTCAAAGCGCTTGTTCTTTCTGTTGTACTCACTTTTTCGCTTCCTTTTACTGCCGTCTTGGCAGAACAACAACC
AGATTCTCCACCTGAAAACCCAAAATACGATGGCATTGAAATTGTCGTTAACGTTAATCAAGCATCGGCACAAGAAATAG
CGGATTTGCTCAAGGGCATCGGCTTAACTAAAGCGCAGGCGATTGTCGATTATCGTGACCAACAAGGGCCATTTAAGCGA
ATTGAAGATCTGGCGAAAGTAAGCGGAGTGGGTGAGGCTACTGTGGCCAAAAATGTTGGCCGGATTGAACTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

50

100

0.5
  comEA Vibrio cholerae strain A1552

50

100

0.5
  comEA Vibrio campbellii strain DS40M4

52.577

93.269

0.49
  comEA Vibrio parahaemolyticus RIMD 2210633

50.505

95.192

0.481
  comE1/comEA Haemophilus influenzae Rd KW20

35.455

100

0.375