Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RJD38_RS11680 Genome accession   NZ_CP134271
Coordinates   2533863..2534177 (+) Length   104 a.a.
NCBI ID   WP_005595884.1    Uniprot ID   A0A1B1NMR5
Organism   Vibrio scophthalmi strain 20FBVib0200     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2528863..2539177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD38_RS11665 (RJD38_11660) lon 2528877..2531228 (+) 2352 WP_005595880.1 endopeptidase La -
  RJD38_RS11670 (RJD38_11665) - 2531410..2531694 (+) 285 Protein_2208 HU family DNA-binding protein -
  RJD38_RS11675 (RJD38_11670) ppiD 2531866..2533725 (+) 1860 WP_005595883.1 peptidylprolyl isomerase -
  RJD38_RS11680 (RJD38_11675) comEA 2533863..2534177 (+) 315 WP_005595884.1 ComEA family DNA-binding protein Machinery gene
  RJD38_RS11685 (RJD38_11680) cmk 2534457..2535137 (+) 681 WP_005595886.1 (d)CMP kinase -
  RJD38_RS11690 (RJD38_11685) rpsA 2535246..2536916 (+) 1671 WP_005595887.1 30S ribosomal protein S1 -
  RJD38_RS11695 (RJD38_11690) ihfB 2537119..2537400 (+) 282 WP_005595888.1 integration host factor subunit beta -
  RJD38_RS11700 (RJD38_11695) - 2537534..2537812 (+) 279 WP_005595889.1 LapA family protein -
  RJD38_RS11705 (RJD38_11700) lapB 2537838..2539007 (+) 1170 WP_005595890.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11174.85 Da        Isoelectric Point: 4.5557

>NTDB_id=879576 RJD38_RS11680 WP_005595884.1 2533863..2534177(+) (comEA) [Vibrio scophthalmi strain 20FBVib0200]
MNIKALVLSVVLTFSLPFTAVLAEQQPDSPPENPKYDGIEIVVNVNQASAQEIADLLKGIGLTKAQAIVDYRDQQGPFKR
IEDLAKVSGVGEATVAKNVGRIEL

Nucleotide


Download         Length: 315 bp        

>NTDB_id=879576 RJD38_RS11680 WP_005595884.1 2533863..2534177(+) (comEA) [Vibrio scophthalmi strain 20FBVib0200]
ATGAATATCAAAGCGCTTGTTCTTTCTGTTGTACTCACTTTTTCGCTTCCTTTTACTGCCGTCTTGGCAGAACAACAACC
AGATTCTCCACCTGAAAACCCAAAATACGATGGCATTGAAATTGTCGTTAACGTTAATCAAGCATCGGCACAAGAAATAG
CGGATTTGCTCAAGGGCATCGGCTTAACTAAAGCGCAGGCGATTGTCGATTATCGTGACCAACAAGGGCCATTTAAGCGA
ATTGAAGATCTGGCGAAAGTAAGCGGAGTGGGTGAGGCTACTGTGGCCAAAAATGTTGGCCGGATTGAACTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1NMR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

50.962

100

0.51
  comEA Vibrio cholerae strain A1552

50.962

100

0.51
  comEA Vibrio campbellii strain DS40M4

52.577

93.269

0.49
  comEA Vibrio parahaemolyticus RIMD 2210633

50.505

95.192

0.481
  comE1/comEA Haemophilus influenzae Rd KW20

35.455

100

0.375