Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RJD38_RS06590 Genome accession   NZ_CP134271
Coordinates   1448274..1449797 (+) Length   507 a.a.
NCBI ID   WP_065545890.1    Uniprot ID   A0A1C7FDP8
Organism   Vibrio scophthalmi strain 20FBVib0200     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1443274..1454797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD38_RS06575 (RJD38_06575) - 1444882..1445826 (-) 945 WP_065429601.1 branched-chain amino acid transaminase -
  RJD38_RS06580 (RJD38_06580) ilvM 1445840..1446124 (-) 285 WP_005597332.1 acetolactate synthase 2 small subunit -
  RJD38_RS06585 (RJD38_06585) ilvG 1446126..1447772 (-) 1647 WP_065545891.1 acetolactate synthase 2 catalytic subunit -
  RJD38_RS06590 (RJD38_06590) comM 1448274..1449797 (+) 1524 WP_065545890.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RJD38_RS06595 (RJD38_06595) - 1449873..1450850 (-) 978 WP_065545889.1 DUF2860 domain-containing protein -
  RJD38_RS06600 (RJD38_06600) - 1451403..1452005 (-) 603 WP_005597338.1 thiol:disulfide interchange protein DsbA/DsbL -
  RJD38_RS06605 (RJD38_06605) - 1452037..1453023 (-) 987 WP_065545888.1 serine/threonine protein kinase -
  RJD38_RS06610 (RJD38_06610) ccoG 1453077..1454495 (-) 1419 WP_065545887.1 cytochrome c oxidase accessory protein CcoG -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54921.91 Da        Isoelectric Point: 8.1382

>NTDB_id=879559 RJD38_RS06590 WP_065545890.1 1448274..1449797(+) (comM) [Vibrio scophthalmi strain 20FBVib0200]
MGLAVVYSRASVGVEAPLVTVEVHISNGMPGFALVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASQQIPLNPLTQSEFIGELALSGELRAVKGVLPAALIAQQQGRRLVVPHCNGDQAALVGKEKHKSAQSL
LEVCADLCGQQALALHQTDMQPHIATHARDLRDIIGQQQGKRALEIAAAGHHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEALESASVASLTQQEINQFNWKCRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDALREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPSGHYDAKQSHGNSQAALRYLSRLSGPLLDRFDMSLEIPALPQGTLAEGGER
GEATEVVKARVEKARGEMLARSGKANALLGSREIEQYCHLDRSDAQFLEQALHRLGLSVRAYHRIIKVARTIADLAGEAQ
ISRAHLSEALGYRAMDRLMRHLHAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=879559 RJD38_RS06590 WP_065545890.1 1448274..1449797(+) (comM) [Vibrio scophthalmi strain 20FBVib0200]
ATGGGTTTAGCTGTGGTATACAGCCGCGCATCGGTAGGCGTGGAGGCACCGTTGGTGACGGTTGAGGTGCACATTAGTAA
TGGCATGCCGGGTTTTGCGCTGGTGGGTTTGCCAGAGACAACGGTGAAGGAGTCTCGTGATCGCGTGCGCAGCGCGATCA
TTAACTCGCGTTTTGAGTTTCCGGCCAAGCGGATTACGGTCAATTTAGCGCCCGCTGATTTACCTAAAGAAGGTGGCCGT
TTTGATTTGCCAATTGCGTTAGGCATCTTAGCGGCTTCACAGCAAATTCCACTCAATCCACTCACTCAAAGTGAGTTTAT
TGGTGAACTGGCATTATCTGGGGAATTGCGAGCGGTGAAAGGCGTGTTGCCCGCGGCACTGATCGCGCAGCAACAAGGAC
GCCGTTTGGTGGTGCCGCATTGCAATGGTGACCAAGCCGCATTGGTGGGTAAAGAAAAACATAAATCTGCACAAAGCTTG
CTTGAGGTGTGCGCCGACCTGTGCGGTCAACAAGCATTGGCTTTGCATCAAACCGATATGCAGCCACATATCGCCACTCA
TGCGCGAGATCTGCGTGACATCATTGGTCAGCAGCAGGGTAAGCGTGCGCTGGAAATCGCTGCCGCGGGTCATCATAACT
TGTTGTTTCTTGGCCCTCCGGGCACTGGTAAAACCATGCTCGCTTCACGCCTGCGCGATTTGCTGCCAGAAATGTCGGAT
GATGAAGCGTTAGAGTCAGCCTCGGTGGCTTCGCTGACCCAGCAAGAAATCAATCAATTTAACTGGAAATGTCGGCCATT
TCGCTCGCCGCACCACTCCAGTTCGATGGCTGCACTGGTCGGTGGTGGCTCGGTTCCTAGGCCGGGGGAGATTTCTTTGG
CGCATAATGGGCTGTTATTTCTTGATGAGATGCCTGAGTTTGAACGTAAAGTTTTAGATGCATTACGTGAGCCGCTGGAA
TCTGGTGAGATTATTATTTCCCGTGCGCAAGGCAAAACTCGTTTTCCTGCGCGCTTTCAGTTAGTCGGAGCGCTTAATCC
AAGCCCGAGTGGTCATTATGATGCCAAGCAAAGTCATGGTAATTCTCAGGCGGCACTGCGTTATTTGAGTCGTTTGTCAG
GGCCGTTGTTGGATCGTTTTGATATGTCGTTAGAAATCCCAGCCTTGCCACAAGGGACATTGGCCGAAGGTGGTGAGCGA
GGAGAAGCGACTGAGGTGGTGAAAGCCCGCGTGGAAAAAGCTCGCGGGGAGATGCTTGCTCGGAGTGGTAAAGCCAATGC
TCTGTTGGGTAGTCGAGAGATCGAGCAATACTGCCACCTTGATCGAAGTGACGCGCAATTTTTAGAGCAAGCGTTGCATC
GTTTAGGCTTATCGGTTCGCGCCTATCATCGCATCATTAAAGTGGCGCGCACCATTGCTGACTTGGCTGGTGAAGCGCAG
ATTTCACGAGCGCACTTATCCGAAGCGTTAGGTTATCGCGCAATGGATCGATTAATGCGCCATTTACACGCGCAAGCGGT
ATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7FDP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

81.46

100

0.815
  comM Vibrio campbellii strain DS40M4

80.473

100

0.805
  comM Haemophilus influenzae Rd KW20

64.229

99.803

0.641
  comM Glaesserella parasuis strain SC1401

63.405

100

0.639
  comM Legionella pneumophila str. Paris

49.405

99.408

0.491
  comM Legionella pneumophila strain ERS1305867

49.405

99.408

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.291

100

0.444