Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RJD38_RS04415 Genome accession   NZ_CP134271
Coordinates   998788..1000011 (+) Length   407 a.a.
NCBI ID   WP_065545001.1    Uniprot ID   A0A1C7F7I6
Organism   Vibrio scophthalmi strain 20FBVib0200     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 993788..1005011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD38_RS04405 (RJD38_04405) pilA 996594..997052 (+) 459 WP_065430953.1 pilin Machinery gene
  RJD38_RS04410 (RJD38_04410) pilB 997052..998734 (+) 1683 WP_065545002.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RJD38_RS04415 (RJD38_04415) pilC 998788..1000011 (+) 1224 WP_065545001.1 type II secretion system F family protein Machinery gene
  RJD38_RS04420 (RJD38_04420) pilD 1000117..1000986 (+) 870 WP_065545000.1 prepilin peptidase Machinery gene
  RJD38_RS04425 (RJD38_04425) coaE 1000991..1001599 (+) 609 WP_065430956.1 dephospho-CoA kinase -
  RJD38_RS04430 (RJD38_04430) zapD 1001634..1002374 (+) 741 WP_005593976.1 cell division protein ZapD -
  RJD38_RS04435 (RJD38_04435) yacG 1002450..1002644 (+) 195 WP_005593974.1 DNA gyrase inhibitor YacG -
  RJD38_RS04440 (RJD38_04440) rplS 1002849..1003202 (-) 354 WP_005593972.1 50S ribosomal protein L19 -
  RJD38_RS04445 (RJD38_04445) trmD 1003252..1004001 (-) 750 WP_005593971.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RJD38_RS04450 (RJD38_04450) rimM 1004029..1004583 (-) 555 WP_005593970.1 ribosome maturation factor RimM -
  RJD38_RS04455 (RJD38_04455) rpsP 1004608..1004856 (-) 249 WP_005593968.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45517.72 Da        Isoelectric Point: 10.2692

>NTDB_id=879552 RJD38_RS04415 WP_065545001.1 998788..1000011(+) (pilC) [Vibrio scophthalmi strain 20FBVib0200]
MNKKSQQRLKIYRWKGTNSVGRRVTGKYLAFRESDVRQRLKQQKIRINQLTSHKLSWLQRQLETVKPKEITLLTRQLATI
LDTGIPLVQALKLVNDNSKKSGMLALLLTITSQVEAGLPLSQALKATHQFDSLYIDLVATGEATGQLNQVFSRIAEHREK
SEHLKAKVIKAMIYPSIVLLTALAVSWVMLTIVIPEFDSMFQSFGAELPWFTQQVLSLSYFAREQGGTIAISMVSSLLLC
KWAQARSSRCRIYLSRTSLRLPLIGPIISKAAIAKFSRTMATSFSAGIPILSCLKSAAKTTNQLYYQAALERVLKDTAAG
MPFYLAMRDSDTFPEMPLQMLMIGEEAGKLDEMLIKIATIYEKEIDDTVDNLGKIIEPAIIIFLSIVVGSLVIAIYLPIF
NLMNVIG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=879552 RJD38_RS04415 WP_065545001.1 998788..1000011(+) (pilC) [Vibrio scophthalmi strain 20FBVib0200]
ATGAATAAAAAATCACAGCAGCGGTTGAAAATCTATCGCTGGAAGGGAACCAACTCTGTGGGTCGGCGTGTCACGGGTAA
ATACTTGGCATTCCGTGAGAGCGATGTTCGTCAGCGATTAAAGCAACAAAAGATCCGCATCAATCAGTTAACCTCACACA
AACTTTCTTGGCTTCAGCGCCAACTCGAAACGGTTAAGCCCAAAGAGATCACCTTACTTACCCGCCAATTAGCCACCATT
CTCGATACTGGAATTCCGCTCGTTCAAGCGCTCAAACTGGTCAACGACAACAGCAAAAAATCCGGAATGCTCGCCCTACT
CCTAACGATAACCAGCCAAGTTGAAGCAGGCCTTCCTCTCAGCCAGGCCTTAAAAGCAACGCATCAGTTTGATTCTCTTT
ATATCGATCTTGTCGCGACGGGGGAAGCGACAGGACAGCTCAACCAAGTGTTTTCCCGTATCGCCGAACACCGTGAAAAA
TCTGAGCACCTCAAAGCCAAAGTAATCAAAGCAATGATCTACCCTTCTATCGTTTTACTCACCGCTTTGGCCGTCAGTTG
GGTGATGTTAACCATCGTCATTCCTGAATTTGATAGTATGTTCCAAAGCTTTGGCGCTGAACTGCCTTGGTTTACTCAAC
AAGTATTATCGCTGTCCTACTTTGCTCGTGAACAGGGCGGAACGATCGCCATAAGCATGGTCAGTTCTCTACTGCTCTGC
AAATGGGCTCAAGCACGTTCGTCTCGCTGCCGGATCTACTTGAGCCGAACCAGTTTGCGCCTCCCTCTCATCGGCCCAAT
CATCAGTAAGGCGGCAATCGCTAAGTTCAGTCGCACCATGGCCACCAGCTTTTCGGCTGGCATTCCAATATTGTCTTGTT
TGAAATCAGCCGCGAAAACCACCAATCAGCTCTATTACCAAGCGGCTCTTGAACGAGTGCTAAAAGATACCGCAGCAGGC
ATGCCGTTTTATCTCGCCATGCGCGACAGCGATACTTTTCCTGAAATGCCATTGCAAATGCTGATGATTGGCGAAGAGGC
AGGTAAGCTTGATGAGATGCTGATTAAGATCGCGACCATCTATGAAAAAGAAATCGATGACACCGTTGATAACCTTGGCA
AAATAATTGAACCGGCCATTATCATTTTTCTCAGTATCGTGGTAGGTAGCCTCGTTATCGCTATCTACTTACCAATATTT
AATTTAATGAACGTTATAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7F7I6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

57.75

98.28

0.568
  pilC Vibrio campbellii strain DS40M4

57.357

98.526

0.565
  pilC Acinetobacter baylyi ADP1

38.235

100

0.383
  pilC Acinetobacter baumannii D1279779

37.5

100

0.376