Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   RHP47_RS12570 Genome accession   NZ_CP134200
Coordinates   2566890..2567252 (-) Length   120 a.a.
NCBI ID   WP_149821397.1    Uniprot ID   -
Organism   Thermosynechococcus sp. QKsg1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2561890..2572252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP47_RS12545 (RHP47_12545) - 2562253..2563008 (+) 756 WP_310840628.1 MBL fold metallo-hydrolase -
  RHP47_RS12550 (RHP47_12550) - 2563011..2563502 (+) 492 WP_286625967.1 phosphate-starvation-inducible PsiE family protein -
  RHP47_RS12555 (RHP47_12555) - 2563479..2564339 (-) 861 WP_315863464.1 prephenate/arogenate dehydrogenase -
  RHP47_RS12560 (RHP47_12560) - 2564469..2565623 (+) 1155 WP_286668778.1 HhoA/HhoB/HtrA family serine endopeptidase -
  RHP47_RS12565 (RHP47_12565) - 2565625..2566887 (+) 1263 WP_310840631.1 phospholipid carrier-dependent glycosyltransferase -
  RHP47_RS12570 (RHP47_12570) pilH 2566890..2567252 (-) 363 WP_149821397.1 response regulator transcription factor Machinery gene
  RHP47_RS12575 (RHP47_12575) - 2567340..2568200 (-) 861 WP_310840633.1 ABC transporter ATP-binding protein -
  RHP47_RS12580 (RHP47_12580) cbiQ 2568202..2568990 (-) 789 WP_149821401.1 cobalt ECF transporter T component CbiQ -
  RHP47_RS12585 (RHP47_12585) - 2568998..2569303 (-) 306 WP_315863442.1 energy-coupling factor ABC transporter substrate-binding protein -
  RHP47_RS12590 (RHP47_12590) - 2569296..2570072 (-) 777 WP_310840636.1 energy-coupling factor ABC transporter permease -
  RHP47_RS12595 (RHP47_12595) - 2570310..2570615 (+) 306 WP_149821405.1 cell division protein SepF -
  RHP47_RS12600 (RHP47_12600) - 2570623..2571009 (+) 387 WP_310840638.1 hypothetical protein -
  RHP47_RS12605 (RHP47_12605) recF 2570948..2572087 (-) 1140 WP_310840640.1 DNA replication/repair protein RecF -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13460.72 Da        Isoelectric Point: 4.3603

>NTDB_id=879250 RHP47_RS12570 WP_149821397.1 2566890..2567252(-) (pilH) [Thermosynechococcus sp. QKsg1]
MATIMIVDDSPTLRAMIVQLMKEQNYDVVEAEDGIEAQEKIKAQCPDLVILDVVMPRMNGYELCRWIKGEAACQSVPVIM
CTTKSEEFDIHWGKKQGVDAYITKPFDPAELIATVKQLLG

Nucleotide


Download         Length: 363 bp        

>NTDB_id=879250 RHP47_RS12570 WP_149821397.1 2566890..2567252(-) (pilH) [Thermosynechococcus sp. QKsg1]
ATGGCTACAATTATGATTGTTGATGACAGCCCCACCCTGCGGGCAATGATTGTTCAGCTGATGAAAGAGCAGAACTATGA
CGTTGTTGAGGCCGAGGATGGTATCGAAGCCCAAGAAAAGATCAAGGCTCAATGTCCTGATTTGGTGATTCTGGATGTGG
TGATGCCGCGCATGAATGGTTACGAACTGTGCCGCTGGATTAAGGGTGAAGCGGCTTGCCAAAGTGTGCCCGTGATCATG
TGCACCACCAAAAGCGAAGAGTTTGATATTCACTGGGGTAAAAAGCAGGGGGTGGATGCCTACATCACCAAACCCTTTGA
TCCTGCAGAACTCATTGCCACTGTTAAACAACTCCTAGGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

54.622

99.167

0.542
  micA Streptococcus pneumoniae Cp1015

41.176

99.167

0.408
  chpA Acinetobacter baumannii strain A118

40.517

96.667

0.392
  vicR Streptococcus mutans UA159

38.655

99.167

0.383
  pilG Acinetobacter baumannii strain A118

39.474

95

0.375