Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RIN69_RS21485 Genome accession   NZ_CP134152
Coordinates   4728701..4730224 (+) Length   507 a.a.
NCBI ID   WP_313854458.1    Uniprot ID   -
Organism   Winslowiella toletana strain 1.2.20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4723701..4735224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN69_RS21465 (RIN69_21465) ilvE 4725270..4726199 (-) 930 WP_313854451.1 branched-chain-amino-acid transaminase -
  RIN69_RS21470 (RIN69_21470) ilvM 4726218..4726475 (-) 258 WP_313854453.1 acetolactate synthase 2 small subunit -
  RIN69_RS21475 (RIN69_21475) ilvG 4726472..4728118 (-) 1647 WP_313854455.1 acetolactate synthase 2 catalytic subunit -
  RIN69_RS21480 (RIN69_21480) ilvL 4728269..4728367 (-) 99 WP_072133251.1 ilv operon leader peptide -
  RIN69_RS21485 (RIN69_21485) comM 4728701..4730224 (+) 1524 WP_313854458.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RIN69_RS21490 (RIN69_21490) - 4730252..4730590 (-) 339 WP_052900516.1 DUF413 domain-containing protein -
  RIN69_RS21495 (RIN69_21495) hdfR 4730713..4731534 (+) 822 WP_313854460.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54987.06 Da        Isoelectric Point: 7.2891

>NTDB_id=878908 RIN69_RS21485 WP_313854458.1 4728701..4730224(+) (comM) [Winslowiella toletana strain 1.2.20]
MAIAIVSTRAALGVEAPLVSVEVHLSNGLPALSLVGLPETTVKEARDRVRSAIINSGFTFPAKRITVNLAPADLPKEGGR
YDLPIAIAILAASEQIPDDKLPDYEFLGELALSGALRGVQGAIPASIAALHSGRQLILSRDNQQDVGLIQHGESLVASHL
LEVCSFLHGQSSLAVAVADALAEAENPHDLNEIIGQHQARRALEITAAGGHNLLLIGPPGTGKTMLATRLVGLMPPLSDH
EALECAAIASLVGSGTMHKQWRQRPFRAPHHSSSMYALVGGGSLPRPGEISLAHNGVLFLDELPEFERRALDALREPIES
GEISISRARAKVTYPARFQLVAAMNPSPSGHYQGMHSRSSPQQTLRYLSRLSGPFLDRFDLSLEVPLLPSGMLSSRERCC
SESTETVRQRVLTVRKRQLSRAGKSNAMLSNSEIQQWCVISQQDAEWLESVLIKLGLSVRAWQRIVKVARTIADLAGEEE
IQRAHLHEALSYRAIDRLLIHLHKSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=878908 RIN69_RS21485 WP_313854458.1 4728701..4730224(+) (comM) [Winslowiella toletana strain 1.2.20]
ATGGCGATTGCGATTGTCTCAACGCGTGCGGCGCTGGGTGTTGAAGCACCGCTGGTTTCTGTCGAAGTACATCTAAGTAA
CGGTCTGCCCGCGCTATCTTTGGTCGGTTTACCCGAAACCACGGTAAAAGAAGCACGCGATCGCGTCAGAAGTGCGATTA
TTAACAGTGGATTTACCTTTCCAGCTAAACGCATCACCGTCAACCTGGCACCCGCCGACCTGCCAAAAGAGGGTGGCCGC
TATGACCTGCCGATAGCCATCGCTATTCTTGCCGCCTCAGAGCAAATCCCTGACGATAAGTTGCCTGACTATGAATTCCT
GGGAGAGTTAGCACTTAGCGGCGCACTACGAGGCGTACAGGGCGCTATTCCTGCGTCGATCGCTGCGCTGCATAGTGGTC
GCCAGCTGATTCTGTCGCGGGATAATCAACAGGATGTCGGTTTAATCCAGCATGGCGAAAGTTTAGTTGCCAGCCATCTG
CTGGAGGTGTGTAGTTTTTTGCATGGTCAGAGCAGCCTGGCGGTGGCCGTTGCCGATGCGTTGGCTGAAGCTGAAAATCC
GCACGATCTCAATGAAATCATCGGTCAGCATCAGGCCAGGCGCGCTTTAGAAATTACGGCGGCAGGAGGCCACAATCTGC
TGCTTATTGGCCCGCCCGGCACTGGCAAAACTATGCTGGCGACCCGACTGGTTGGATTGATGCCGCCATTAAGCGACCAC
GAAGCGCTGGAGTGTGCGGCAATTGCCAGCCTGGTTGGTAGCGGCACGATGCATAAACAATGGCGTCAGCGGCCGTTCCG
GGCGCCTCATCACAGCTCCTCAATGTATGCGCTGGTCGGTGGCGGTTCGCTGCCGCGTCCGGGAGAAATTTCTCTTGCCC
ACAATGGCGTATTGTTTCTTGATGAGCTGCCGGAGTTTGAGCGACGGGCGTTGGATGCATTAAGAGAACCTATCGAGTCC
GGGGAGATTTCGATTTCACGCGCACGCGCTAAAGTGACCTACCCGGCACGTTTTCAGCTGGTTGCCGCCATGAATCCCAG
CCCTTCCGGCCATTATCAGGGCATGCACAGCCGCAGTTCACCGCAGCAAACTTTGCGCTATCTCAGTCGCTTGTCAGGTC
CATTTCTTGACCGATTTGATCTGTCGCTGGAAGTACCATTACTGCCTTCGGGAATGTTAAGCAGCCGCGAACGGTGTTGT
AGTGAGTCTACAGAGACGGTCAGACAGCGAGTGTTAACAGTCCGGAAGCGACAGCTGTCTCGCGCAGGGAAAAGCAATGC
CATGCTAAGCAATAGTGAGATACAGCAATGGTGTGTAATTTCTCAGCAGGACGCTGAATGGCTGGAGTCGGTACTGATAA
AACTGGGGCTTTCAGTCAGAGCATGGCAACGTATTGTTAAAGTTGCACGCACTATTGCTGACCTGGCGGGTGAGGAAGAG
ATACAGCGTGCGCATCTGCATGAAGCTCTTAGCTATCGCGCTATCGACCGCTTACTGATTCATTTGCATAAAAGTCTGGA
ATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

61.905

99.408

0.615
  comM Haemophilus influenzae Rd KW20

61.417

100

0.615
  comM Glaesserella parasuis strain SC1401

61.538

100

0.615
  comM Vibrio campbellii strain DS40M4

60.913

99.408

0.606
  comM Legionella pneumophila str. Paris

47.782

97.83

0.467
  comM Legionella pneumophila strain ERS1305867

47.782

97.83

0.467
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.668

98.028

0.438