Detailed information NTG0878824

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: RI845_RS14670
• Genome accession: NZ_CP134146
• Coordinates: 3397986..3399098 (-)
• Length: 370 a.a.
• NCBI ID: WP_348386916.1
• Uniprot ID: -
• Organism: Thalassotalea nanhaiensis strain SQ345
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3392986..3404098

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RI845_RS14655 (RI845_14655)	-	3393507..3395726 (-)	2220	WP_348386913.1	thiamine pyrophosphate-dependent enzyme	-
RI845_RS14660 (RI845_14660)	-	3395793..3396980 (-)	1188	WP_348386914.1	acyl-CoA dehydrogenase	-
RI845_RS14665 (RI845_14665)	-	3397134..3397970 (+)	837	WP_348386915.1	LysR family transcriptional regulator	-
RI845_RS14670 (RI845_14670)	pilU	3397986..3399098 (-)	1113	WP_348386916.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
RI845_RS14675 (RI845_14675)	pilT	3399112..3400155 (-)	1044	WP_348386917.1	type IV pilus twitching motility protein PilT	Machinery gene
RI845_RS14680 (RI845_14680)	-	3400192..3400875 (+)	684	WP_348386918.1	YggS family pyridoxal phosphate-dependent enzyme	-
RI845_RS14685 (RI845_14685)	proC	3400947..3401762 (+)	816	WP_348386919.1	pyrroline-5-carboxylate reductase	-
RI845_RS14690 (RI845_14690)	-	3401837..3402385 (+)	549	WP_348386920.1	YggT family protein	-
RI845_RS14695 (RI845_14695)	-	3402478..3402921 (+)	444	WP_348386921.1	DUF4426 domain-containing protein	-
RI845_RS14700 (RI845_14700)	-	3403019..3403609 (+)	591	WP_348386922.1	XTP/dITP diphosphatase	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 41015.03 Da
• Isoelectric Point: 5.2860

>NTDB_id=878824 RI845_RS14670 WP_348386916.1 3397986..3399098(-) (pilU) [Thalassotalea nanhaiensis strain SQ345]
MYLHQLLKTMVKEDASDLFITVNLPASAKINGELQPVDEKVLSFDDALELVHSSMTEKHIAEYTDTKECNYAIALEDIGR
FRISAFWQREMPGMVIRRIVTDIPDTEKLGLPPVLKELVMSKRGLLLFVGGTGTGKSTSMASLIGYRNRNARGHILTIED
PVEFVHEHGKSMITQREVGMDTESFDAALKSSLRQAPDVILIGEIRSQDIMEHALSFAETGHLCIATLHANNANQAIDRI
MHLVPPEQHEKLQFDLALNLRGIVAQQLVPTRDGLGRKAAIEILLNSPYISELIKKGEVGDIKQVMAKSRELGMQTFDQA
LFDLYEAGEISYTDALHNADSPNDLRLMIKLRSNDQTGIGGLKGATLDGD

Nucleotide

• Length: 1113 bp

>NTDB_id=878824 RI845_RS14670 WP_348386916.1 3397986..3399098(-) (pilU) [Thalassotalea nanhaiensis strain SQ345]
ATGTATTTACACCAATTACTAAAAACCATGGTGAAGGAAGATGCCTCTGATTTGTTTATCACGGTTAATCTTCCGGCCAG
TGCCAAAATTAATGGCGAATTACAGCCGGTTGATGAAAAGGTCTTAAGTTTTGACGATGCATTAGAGCTGGTACATAGTT
CGATGACCGAAAAACATATTGCTGAATATACTGACACCAAAGAGTGTAACTACGCCATTGCGCTGGAAGACATTGGCCGT
TTTCGTATTTCTGCATTTTGGCAACGTGAAATGCCTGGCATGGTCATTCGTCGAATTGTTACCGACATTCCTGATACTGA
AAAGCTTGGCTTACCACCAGTATTAAAAGAGCTGGTGATGTCAAAACGTGGTTTGTTATTGTTTGTTGGTGGTACCGGTA
CTGGTAAGTCAACATCAATGGCATCTCTTATCGGCTATCGTAACCGCAATGCTCGAGGTCATATTCTTACCATTGAAGAT
CCGGTGGAATTTGTACATGAGCATGGCAAGTCAATGATCACACAACGCGAAGTGGGCATGGACACTGAATCTTTTGATGC
GGCGCTGAAAAGCTCATTACGTCAAGCGCCCGATGTTATCCTTATTGGTGAGATCCGCTCACAGGATATTATGGAGCACG
CATTAAGCTTTGCTGAAACTGGTCACTTATGTATTGCCACACTGCATGCCAATAATGCGAACCAAGCAATTGACCGTATC
ATGCATTTAGTGCCGCCAGAGCAGCATGAAAAACTGCAATTTGATTTAGCCTTGAATTTACGTGGTATTGTTGCTCAGCA
ACTGGTGCCAACACGTGATGGTTTAGGTCGTAAAGCTGCGATTGAAATTTTACTTAATTCACCATACATTTCTGAGCTCA
TTAAAAAAGGTGAAGTCGGTGATATTAAGCAAGTGATGGCCAAGTCGCGAGAACTCGGTATGCAAACGTTTGATCAGGCA
TTATTCGATTTATACGAAGCTGGCGAGATCAGCTATACCGATGCCTTGCATAATGCAGATTCACCAAATGATTTACGCTT
AATGATCAAGCTTCGCAGTAATGATCAAACCGGTATTGGTGGCCTTAAAGGCGCTACGTTAGATGGTGATTAG

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (105-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	59.207	95.405	0.565
pilU	Vibrio cholerae strain A1552	56.793	99.459	0.565
pilU	Acinetobacter baylyi ADP1	59.091	95.135	0.562
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40.73	96.216	0.392