Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RI845_RS00880 Genome accession   NZ_CP134146
Coordinates   174878..176410 (-) Length   510 a.a.
NCBI ID   WP_348387871.1    Uniprot ID   -
Organism   Thalassotalea nanhaiensis strain SQ345     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 169878..181410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI845_RS00865 (RI845_00865) - 171060..172139 (-) 1080 WP_348387868.1 asparaginase -
  RI845_RS00870 (RI845_00870) ilvC 172364..173848 (-) 1485 WP_348387869.1 ketol-acid reductoisomerase -
  RI845_RS00875 (RI845_00875) ilvY 173997..174881 (+) 885 WP_348387870.1 HTH-type transcriptional activator IlvY -
  RI845_RS00880 (RI845_00880) comM 174878..176410 (-) 1533 WP_348387871.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RI845_RS00885 (RI845_00885) - 177110..178036 (+) 927 WP_348387872.1 branched-chain amino acid transaminase -
  RI845_RS00890 (RI845_00890) ilvD 178068..179927 (+) 1860 WP_348387873.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 56060.39 Da        Isoelectric Point: 7.3195

>NTDB_id=878812 RI845_RS00880 WP_348387871.1 174878..176410(-) (comM) [Thalassotalea nanhaiensis strain SQ345]
MALASIYTRARIGLESPLVSIEIHLSAGLPGFQIVGLAETSVKESKNRVRSALINCGFEFPCQKIVVNLAPADLPKEGGH
FDLPIAVGILAASNQIPNTELNNYEFAGELALSGELRNIVGEIPIAIASRDSQRTLILPLGNAQLASRVEHAQIIALQHL
SQLFPHFARQQPLPLINYEEPDLSTDIPHDPIKDIADVMGQPLAKRALELAAAGSHNLLFIGPPGTGKTMLASRLPGILP
QMTTSESLETAAIHSICTTAINNQHWLKRPFRAPHHTASSAALVGGGSQPVPGEISLAHNGVLFLDELPEYDRKVLDVLR
EPMESGEVTISRAMHKTTYPAKFQLVAAMNPSPTGFYLDKRSTPEQILRYLNKLSGPFLDRIDIQLEVSRLPKGLWNNNE
HNNETSEVIRARVHNCRQIQLARQGKANAHLSSPELKQHCYLNDADCEFLELAVEKLGLSTRAHHKLLKIARTIADLKTE
KQIKREHLVEALSYRAMDRLIQHLTSSISG

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=878812 RI845_RS00880 WP_348387871.1 174878..176410(-) (comM) [Thalassotalea nanhaiensis strain SQ345]
ATGGCTCTCGCATCTATCTATACTCGTGCCCGAATAGGGCTGGAATCTCCCCTTGTATCAATTGAAATTCACTTAAGTGC
CGGTTTACCGGGCTTTCAAATTGTCGGACTAGCAGAAACCTCTGTTAAAGAATCAAAGAATAGAGTTCGCAGCGCGCTGA
TTAATTGTGGCTTTGAATTTCCTTGTCAAAAAATTGTAGTAAACCTTGCTCCGGCTGACTTACCCAAAGAAGGTGGTCAC
TTTGACTTGCCTATTGCCGTTGGCATTCTCGCCGCCTCCAATCAAATCCCTAATACTGAATTAAACAATTATGAATTTGC
CGGAGAGTTAGCGTTATCAGGAGAGCTTAGAAACATTGTAGGTGAAATTCCAATTGCCATAGCAAGCAGAGATAGCCAGC
GTACGTTAATACTGCCACTTGGTAATGCCCAACTCGCCAGCAGAGTTGAGCACGCTCAGATAATTGCCCTGCAACACTTG
AGTCAACTGTTTCCTCATTTTGCCCGCCAGCAACCTCTGCCATTAATCAACTATGAAGAACCAGACTTAAGCACAGACAT
ACCGCATGACCCGATCAAAGACATTGCCGACGTTATGGGTCAACCATTAGCCAAAAGAGCATTGGAACTGGCGGCGGCCG
GCAGCCATAATTTACTGTTTATTGGCCCTCCTGGAACCGGAAAAACCATGCTTGCCAGCAGACTACCGGGTATTTTGCCA
CAGATGACAACCTCAGAGTCTCTAGAAACTGCGGCCATTCATTCTATTTGCACCACAGCGATTAATAATCAGCATTGGCT
AAAGCGACCTTTTCGCGCGCCGCATCATACCGCCTCATCGGCAGCATTAGTGGGCGGCGGCAGTCAGCCAGTACCTGGTG
AAATATCACTTGCTCACAATGGCGTACTATTTTTAGATGAACTTCCAGAATACGATAGAAAAGTACTGGATGTACTGCGT
GAGCCGATGGAATCTGGGGAAGTAACAATCTCCCGTGCAATGCACAAAACAACGTATCCGGCAAAGTTTCAACTTGTGGC
CGCAATGAACCCTAGCCCCACAGGATTTTATTTGGATAAACGTAGTACACCTGAACAAATACTGCGTTATTTAAATAAAC
TGTCTGGCCCCTTTCTTGACCGCATCGACATTCAATTAGAAGTGAGCCGACTGCCGAAAGGGCTGTGGAATAATAACGAA
CATAATAACGAAACTAGCGAAGTGATACGAGCGCGAGTGCATAACTGTCGTCAAATCCAATTAGCCAGACAAGGTAAAGC
AAATGCCCATTTAAGTAGTCCGGAGTTAAAGCAGCATTGCTATTTAAATGATGCTGATTGTGAGTTTCTAGAACTAGCTG
TTGAAAAGCTTGGCCTTTCAACAAGAGCGCATCACAAGTTATTAAAAATAGCCCGCACCATTGCAGATTTAAAAACAGAG
AAGCAAATCAAACGCGAACACTTAGTTGAAGCGTTATCGTATCGAGCTATGGACAGGTTAATTCAGCACTTAACGTCGAG
CATCTCCGGTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.906

99.608

0.557
  comM Vibrio cholerae strain A1552

55.906

99.608

0.557
  comM Haemophilus influenzae Rd KW20

55.709

99.608

0.555
  comM Glaesserella parasuis strain SC1401

55.621

99.412

0.553
  comM Legionella pneumophila str. Paris

49.503

98.627

0.488
  comM Legionella pneumophila strain ERS1305867

49.503

98.627

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.669

99.608

0.455