Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RGQ13_RS19475 Genome accession   NZ_CP134145
Coordinates   4659618..4661150 (+) Length   510 a.a.
NCBI ID   WP_348391392.1    Uniprot ID   -
Organism   Thalassotalea psychrophila strain SQ149     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4654618..4666150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGQ13_RS19465 (RGQ13_19460) ilvD 4656001..4657860 (-) 1860 WP_348391390.1 dihydroxy-acid dehydratase -
  RGQ13_RS19470 (RGQ13_19465) - 4657897..4658823 (-) 927 WP_348391391.1 branched-chain amino acid transaminase -
  RGQ13_RS19475 (RGQ13_19470) comM 4659618..4661150 (+) 1533 WP_348391392.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RGQ13_RS19480 (RGQ13_19475) ilvY 4661147..4662031 (-) 885 WP_348391393.1 HTH-type transcriptional activator IlvY -
  RGQ13_RS19485 (RGQ13_19480) ilvC 4662178..4663662 (+) 1485 WP_348391394.1 ketol-acid reductoisomerase -
  RGQ13_RS19490 (RGQ13_19485) - 4663919..4664998 (+) 1080 WP_348391395.1 asparaginase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 56109.48 Da        Isoelectric Point: 7.1648

>NTDB_id=878809 RGQ13_RS19475 WP_348391392.1 4659618..4661150(+) (comM) [Thalassotalea psychrophila strain SQ149]
MALASIYTRARIGLESPLVSIEIHLSAGLPAFQIVGLAETSVKESKNRVRSALINCGYEFPCQRIVVNLAPADLPKEGGH
FDLPIAVGILAASNQIPNAELHKYEFAGELALSGELRSIIGEIPIAIASRDSQRTLILPIGNAQLASRVENAKIIALQHL
EQLFPHFARQQPLPLINYEKPDLSADVLHDSIKDIADVMGQPLAKRALELAAAGSHNLLFIGPPGTGKTMLASRLPGILP
QMTSTESLETAAIHSICSTSIDNQYWLKRPFRAPHHTASSAALVGGGGQPVPGEISLAHNGVLFLDELPEYDRKVLDVLR
EPMESGEVTISRAMHKTTYPAKFQLVAAMNPSPTGFYLDKRSTPEQILRYLNKLSGPFLDRIDIQLEVSRLPKGLWNNSE
HNNETSEAIRARVHNCREIQLARQGKANAHLSSPELKQHCYLNDDDCEFLELAVEKLGLSTRAHHKLLKIARTIADLKTQ
PQIKREHLVEALSYRAMDRLIQHLTESMSG

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=878809 RGQ13_RS19475 WP_348391392.1 4659618..4661150(+) (comM) [Thalassotalea psychrophila strain SQ149]
ATGGCTCTCGCATCTATCTATACTCGTGCCCGAATAGGGCTGGAATCTCCCCTTGTATCAATTGAAATTCATTTAAGTGC
CGGCTTACCTGCCTTTCAAATTGTTGGTTTAGCGGAAACATCTGTAAAAGAATCAAAAAATAGAGTCCGTAGCGCGCTGA
TAAATTGTGGCTATGAATTCCCTTGTCAAAGAATCGTAGTAAATCTTGCACCTGCCGACTTACCCAAAGAGGGTGGACAT
TTCGATTTGCCTATTGCCGTAGGCATTCTGGCAGCCTCGAATCAAATTCCTAATGCAGAGTTACACAAATATGAATTTGC
CGGAGAATTAGCGTTATCAGGCGAGCTTAGATCTATTATTGGTGAAATCCCAATCGCCATTGCAAGTAGAGATAGCCAGC
GCACTTTAATACTTCCTATTGGTAATGCCCAACTCGCCAGCAGAGTTGAAAATGCAAAAATTATTGCTCTACAACACTTA
GAACAGCTGTTCCCTCATTTTGCTCGCCAACAACCACTGCCTTTAATTAACTATGAAAAACCAGATTTAAGTGCAGACGT
ATTACATGATTCCATCAAAGATATTGCTGATGTGATGGGCCAACCATTAGCCAAAAGAGCATTAGAGCTAGCCGCCGCAG
GAAGCCATAATTTACTTTTTATAGGCCCACCTGGCACGGGTAAAACCATGTTAGCAAGCCGGCTACCGGGTATTTTACCG
CAAATGACAAGCACGGAATCACTTGAAACAGCGGCCATTCATTCTATTTGTAGCACTTCAATTGATAATCAGTATTGGCT
AAAACGCCCTTTTCGTGCACCGCATCATACCGCGTCCTCTGCAGCGTTAGTTGGTGGCGGTGGTCAGCCAGTACCAGGTG
AGATCTCGCTTGCTCACAATGGCGTACTATTTTTAGACGAACTTCCTGAATATGATAGAAAAGTGTTGGATGTGTTACGA
GAACCTATGGAGTCTGGTGAAGTGACCATTTCTAGAGCCATGCATAAAACCACTTACCCGGCTAAGTTTCAACTTGTGGC
GGCAATGAATCCGAGCCCTACCGGGTTTTATTTAGATAAACGCAGCACACCTGAACAGATACTGCGTTACTTAAATAAGT
TGTCAGGCCCTTTTCTTGATCGCATTGATATTCAATTAGAAGTAAGCCGACTACCGAAAGGCCTATGGAATAATAGCGAG
CACAATAATGAAACAAGCGAGGCTATTCGGGCAAGAGTGCATAACTGTCGCGAGATACAATTGGCCAGACAAGGAAAAGC
AAATGCCCATTTAAGTAGCCCAGAGCTAAAGCAGCATTGTTATTTAAATGATGATGATTGTGAATTTTTAGAACTCGCCG
TTGAAAAGCTTGGCCTTTCAACCCGGGCGCACCACAAGTTATTAAAAATAGCCCGCACTATTGCAGATTTAAAAACACAA
CCGCAAATTAAACGCGAACACTTAGTTGAAGCGTTATCATATCGAGCCATGGACCGATTGATTCAACATTTAACTGAGAG
TATGTCCGGTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.906

99.608

0.557
  comM Haemophilus influenzae Rd KW20

55.424

99.412

0.551
  comM Vibrio campbellii strain DS40M4

55.227

99.412

0.549
  comM Glaesserella parasuis strain SC1401

54.706

100

0.547
  comM Legionella pneumophila str. Paris

49.503

98.627

0.488
  comM Legionella pneumophila strain ERS1305867

49.503

98.627

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.706

100

0.447