Detailed information NTG0878707

Bioinformatically predicted

Overview

• Name: comA
• Type: Regulator
• Locus tag: RIF09_RS01770
• Genome accession: NZ_CP134072
• Coordinates: 371372..373522 (+)
• Length: 716 a.a.
• NCBI ID: WP_063205741.1
• Uniprot ID: -
• Organism: Lactiplantibacillus plantarum strain JGS49
• Function: processing and transport of ComC (predicted from homology) Competence regulation

Genomic Context

Location: 366372..378522

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RIF09_RS01735 (RIF09_01735)	-	366658..366912 (+)	255	WP_310763544.1	GHKL domain-containing protein	-
RIF09_RS01740 (RIF09_01740)	-	366913..367584 (+)	672	WP_236714013.1	response regulator transcription factor	-
RIF09_RS01745 (RIF09_01745)	-	367774..368517 (+)	744	WP_003641982.1	response regulator transcription factor	-
RIF09_RS01750 (RIF09_01750)	-	368822..369595 (-)	774	WP_003646470.1	CPBP family intramembrane glutamic endopeptidase	-
RIF09_RS01755 (RIF09_01755)	plnF	369694..369852 (-)	159	WP_003643811.1	two-peptide bacteriocin plantaricin EF subunit PlnF	-
RIF09_RS01760 (RIF09_01760)	plnE	369877..370047 (-)	171	WP_003641985.1	two-peptide bacteriocin plantaricin EF subunit PlnE	-
RIF09_RS01765 (RIF09_01765)	-	370231..371154 (+)	924	WP_013355080.1	IS30 family transposase	-
RIF09_RS01770 (RIF09_01770)	comA	371372..373522 (+)	2151	WP_063205741.1	peptide cleavage/export ABC transporter	Regulator
RIF09_RS01775 (RIF09_01775)	-	373538..374914 (+)	1377	WP_003641987.1	HlyD family secretion protein	-
RIF09_RS01780 (RIF09_01780)	-	375149..375694 (+)	546	WP_003641989.1	CPBP family intramembrane glutamic endopeptidase	-
RIF09_RS01785 (RIF09_01785)	-	375761..376429 (+)	669	WP_003641990.1	CPBP family intramembrane glutamic endopeptidase	-
RIF09_RS01790 (RIF09_01790)	-	376516..377196 (+)	681	WP_003641991.1	CPBP family intramembrane glutamic endopeptidase	-
RIF09_RS01795 (RIF09_01795)	-	377290..377976 (+)	687	WP_003641992.1	CPBP family intramembrane glutamic endopeptidase	-
RIF09_RS01800 (RIF09_01800)	-	378114..378317 (+)	204	WP_003641993.1	hypothetical protein	-

Sequence

Protein

• Length: 716 a.a.
• Molecular weight: 79912.66 Da
• Isoelectric Point: 6.7528

>NTDB_id=878707 RIF09_RS01770 WP_063205741.1 371372..373522(+) (comA) [Lactiplantibacillus plantarum strain JGS49]
MHWRNYVAQVDEMDCGVAALAMILKNYGSTTSLAYLRNIAKTSLEGTTALGLVKTAEKLGFETKAIQADMSLFEVQDLPL
PFIVHVTKNGDLQHFYVVVKTSKTHVVIADPDPTVAVISMSKERFESEWSGVALFFAPKSEYKPVKQDKGSLWGFIPSLL
KQRRLVINIVLAAVLITIISICGSYFLQAVIDTYIPNNMHSTLAVVAIGLIVFYTFQAIFTYAQNFLLAVLGQRLSIEII
LGYIRHVFELPMSFFATRRTGEIVSRFTDASKIIDALASTIVSLFLDVSIVIIMGAILVIQNMTLFWITLLSLPIYAVVI
LAFNKSFERLNQKEMESNAILSSAIIEDLHGIETVKALNGETERYQKIDSEFVDYLRKSLAYLKADTLQQALKLFIQLVL
EVVVLWVGANLVIHNQLSVGGLMTYNALLAYFVNPLQNIINLQTKLQSAKVANNRLNEMYLVASEFEASRPIHNESQLNG
DIKLQGVSYRYGYGENVLDDVNLTIRQHDKVAIVGMSGSGKSTLVKLLIDFYQPNSGDVILNGFNVKNIDKHTLRTHINY
IPQEPYIFSATIEENLRLGNRSGITEKDIAKACQLALIDTDINKMAMQYQTKLDENGNTLSGGQRQRLTIARALLSPAQV
LIFDESTSGLDAITEKQLIDNLVAMTDKTIIFIAHRLSIAKRTNHIIVLHDGRVAEEGTHAALLNEHGYYYDLINS

Nucleotide

• Length: 2151 bp

>NTDB_id=878707 RIF09_RS01770 WP_063205741.1 371372..373522(+) (comA) [Lactiplantibacillus plantarum strain JGS49]
ATGCATTGGAGAAACTATGTTGCGCAAGTTGACGAGATGGACTGTGGGGTCGCAGCTTTAGCAATGATTTTGAAAAATTA
TGGTTCGACAACATCATTGGCCTATCTAAGAAATATTGCTAAAACGAGTTTAGAAGGGACTACGGCATTAGGATTAGTAA
AAACGGCCGAAAAGTTAGGTTTTGAAACCAAAGCAATTCAAGCAGATATGAGTCTTTTCGAGGTACAAGATTTACCATTG
CCATTCATTGTGCATGTTACCAAAAATGGGGATCTACAGCATTTTTATGTCGTTGTAAAAACCTCGAAAACGCATGTCGT
GATTGCTGATCCGGACCCAACAGTTGCGGTTATCAGTATGTCAAAGGAACGGTTTGAAAGCGAATGGTCCGGAGTTGCCC
TTTTCTTTGCACCGAAGTCGGAATATAAGCCAGTTAAGCAAGATAAGGGCTCACTATGGGGATTTATTCCAAGCTTATTA
AAGCAGCGCCGACTGGTTATTAATATTGTGCTTGCTGCAGTTTTAATCACGATTATTAGTATCTGTGGGTCTTATTTCTT
ACAAGCGGTGATTGATACTTATATTCCCAATAATATGCACAGTACATTGGCAGTGGTGGCCATTGGTCTAATCGTTTTTT
ATACCTTTCAGGCTATCTTTACTTATGCCCAGAATTTTTTATTGGCGGTTTTAGGTCAACGACTTTCGATTGAAATTATT
TTAGGCTATATTCGGCACGTCTTTGAATTGCCAATGAGTTTTTTTGCCACTCGGCGGACGGGGGAAATTGTTTCGAGGTT
TACGGATGCCAGTAAGATTATTGATGCGTTAGCTAGCACAATTGTTTCGCTGTTTTTAGATGTCAGCATCGTTATTATTA
TGGGGGCAATCTTGGTAATCCAGAATATGACACTTTTTTGGATTACGTTACTCTCGTTGCCAATCTACGCGGTTGTCATC
TTAGCCTTTAATAAATCCTTTGAACGATTGAATCAAAAGGAAATGGAGAGCAATGCTATTTTGAGTTCAGCCATTATTGA
GGATCTTCATGGGATTGAAACTGTTAAGGCGCTGAATGGTGAGACGGAACGTTATCAGAAAATTGATTCAGAATTTGTTG
ATTATCTACGTAAGAGTTTAGCCTATCTTAAAGCGGATACTTTGCAACAGGCATTAAAACTGTTTATACAGTTAGTCTTA
GAAGTTGTTGTTCTATGGGTGGGCGCCAATCTCGTCATTCATAATCAGTTATCAGTTGGGGGGCTCATGACATATAATGC
TTTATTAGCCTATTTTGTTAATCCACTACAGAATATTATTAATTTGCAGACTAAGCTTCAAAGCGCTAAGGTCGCTAACA
ACCGGTTAAATGAAATGTATTTGGTCGCTAGTGAATTTGAGGCGTCACGGCCAATTCATAATGAAAGTCAATTAAATGGT
GATATTAAGTTACAAGGGGTCAGCTATCGTTATGGTTACGGTGAAAATGTCTTAGATGATGTTAATTTGACGATTCGACA
ACATGATAAGGTTGCAATTGTGGGGATGAGTGGCTCTGGCAAGTCCACGTTAGTTAAATTGCTTATTGATTTTTATCAAC
CAAATAGTGGTGATGTCATATTGAATGGCTTCAACGTTAAGAACATCGATAAGCATACATTGCGGACCCATATTAACTAC
ATCCCGCAGGAACCATACATCTTTTCAGCGACCATTGAAGAAAATTTAAGATTAGGTAATCGCAGCGGTATTACTGAGAA
AGATATTGCGAAGGCTTGCCAATTGGCGTTAATTGATACGGATATTAATAAAATGGCCATGCAATACCAAACTAAGCTAG
ATGAGAATGGTAATACACTATCAGGTGGTCAGCGACAACGATTAACGATTGCGAGAGCGTTATTATCACCCGCTCAAGTC
TTGATATTTGATGAGTCGACGAGTGGACTGGATGCAATTACTGAAAAACAATTAATTGATAATTTAGTGGCAATGACTGA
CAAGACGATTATTTTTATTGCCCACCGGTTGTCGATTGCAAAGCGGACGAATCATATCATCGTTCTGCATGATGGTCGGG
TCGCTGAAGAGGGGACCCATGCGGCATTGTTGAATGAACATGGTTACTATTACGACTTGATCAATAGCTGA

Domains

Predicted by InterproScan.

• Peptidase C39 family (Peptidase_C39) (5-140)

• ABC transporter (ABC_tran) (498-648)

• ABC transporter transmembrane region (ABC_membrane) (166-436)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Streptococcus mitis NCTC 12261	58.766	99.581	0.585
comA	Streptococcus pneumoniae Rx1	58.485	99.581	0.582
comA	Streptococcus pneumoniae D39	58.485	99.581	0.582
comA	Streptococcus pneumoniae R6	58.485	99.581	0.582
comA	Streptococcus pneumoniae TIGR4	58.345	99.581	0.581
comA	Streptococcus mitis SK321	58.205	99.581	0.58
comA	Streptococcus gordonii str. Challis substr. CH1	56.964	100	0.571
comA/nlmT	Streptococcus mutans UA159	54.457	100	0.546