Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   RDV49_RS08915 Genome accession   NZ_CP133988
Coordinates   1854557..1855507 (-) Length   316 a.a.
NCBI ID   WP_003006384.1    Uniprot ID   A0AAX4AWL2
Organism   Streptococcus parasanguinis strain B-1756     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1849557..1860507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV49_RS08895 (RDV49_08895) - 1850205..1850690 (-) 486 WP_023917679.1 LURP-one-related/scramblase family protein -
  RDV49_RS08900 (RDV49_08900) prsA 1850944..1851888 (-) 945 WP_003006393.1 peptidylprolyl isomerase PrsA -
  RDV49_RS08905 (RDV49_08905) - 1851961..1852680 (-) 720 WP_003006390.1 O-methyltransferase -
  RDV49_RS08910 (RDV49_08910) pepF 1852682..1854484 (-) 1803 WP_003006387.1 oligoendopeptidase F Regulator
  RDV49_RS08915 (RDV49_08915) coiA 1854557..1855507 (-) 951 WP_003006384.1 competence protein CoiA family protein Machinery gene
  RDV49_RS08920 (RDV49_08920) - 1855581..1856162 (-) 582 WP_003006381.1 hypothetical protein -
  RDV49_RS08925 (RDV49_08925) - 1856330..1857502 (-) 1173 WP_003006378.1 MFS transporter -
  RDV49_RS08930 (RDV49_08930) - 1857561..1858919 (-) 1359 WP_003006375.1 DUF1958 domain-containing protein -
  RDV49_RS08935 (RDV49_08935) - 1859108..1859815 (-) 708 WP_003006372.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 37834.36 Da        Isoelectric Point: 6.8570

>NTDB_id=878176 RDV49_RS08915 WP_003006384.1 1854557..1855507(-) (coiA) [Streptococcus parasanguinis strain B-1756]
MFIAMDNNQKRWNCMEEIPAVTEGPFYCLACHSPVRLKNGSVLRAHFAHVELQHCPYHHEAESFEHLELKASLYNWASRE
SKTEVESYLADFQQIADLLVVDKNLALEVQCSSLSLERLKERSDAYRSHGYQVYWLLGKNLWLKKRLTKLQAGFLYFSQN
RGFHLWELDLTKKELRLQYLIHEDLRGRLHYQTEIFPFGQKSLLEVLRTPYLSQSMQQMAVELDRTFLTYIQQQLFYRHP
KWLKLQEELYLQGHHLMELGLDFFYPLCRPILSQNLLQIEEDVEDYYQQFMTYYQSQGIQPVQILYPPRFYAQQKS

Nucleotide


Download         Length: 951 bp        

>NTDB_id=878176 RDV49_RS08915 WP_003006384.1 1854557..1855507(-) (coiA) [Streptococcus parasanguinis strain B-1756]
ATGTTTATTGCCATGGATAACAATCAAAAGCGGTGGAACTGTATGGAAGAGATCCCAGCTGTGACAGAAGGTCCCTTCTA
TTGCTTGGCTTGTCATAGTCCAGTGCGTCTAAAAAATGGCTCGGTTCTAAGGGCTCATTTTGCTCATGTAGAATTACAGC
ATTGTCCCTATCATCACGAAGCGGAGAGTTTTGAACATCTGGAATTGAAAGCAAGTCTTTATAACTGGGCCTCTAGGGAG
TCTAAAACAGAGGTAGAAAGTTATTTAGCAGACTTTCAACAAATTGCCGATCTTTTGGTAGTAGACAAGAACTTAGCTTT
GGAAGTGCAGTGCAGCTCCCTATCTTTAGAACGCTTGAAGGAGAGAAGTGATGCTTATCGATCCCATGGTTACCAGGTCT
ATTGGTTACTTGGTAAAAATTTGTGGCTCAAGAAAAGACTAACAAAGCTGCAGGCTGGCTTTCTTTATTTTAGTCAGAAT
CGCGGGTTCCATCTTTGGGAATTGGATCTGACAAAGAAAGAGCTACGTTTGCAATACCTCATTCATGAGGATTTACGAGG
ACGATTGCATTATCAAACAGAAATTTTCCCTTTTGGTCAAAAGTCTTTACTGGAAGTCTTACGAACCCCTTATCTTTCGC
AATCCATGCAGCAAATGGCAGTCGAGCTCGATCGTACATTTTTAACGTATATCCAGCAGCAACTCTTTTATCGTCACCCA
AAGTGGCTGAAACTTCAGGAAGAACTCTATTTGCAGGGACACCATCTGATGGAACTGGGGCTAGATTTCTTTTATCCTCT
TTGTCGTCCGATCCTTTCACAGAACTTACTTCAAATTGAAGAGGATGTAGAAGATTACTACCAGCAGTTTATGACCTATT
ATCAGTCGCAAGGGATCCAACCTGTTCAGATCCTTTATCCCCCACGTTTTTATGCTCAGCAGAAAAGCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(23-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

50.479

99.051

0.5
  coiA Streptococcus pneumoniae Rx1

49.521

99.051

0.491
  coiA Streptococcus pneumoniae D39

49.521

99.051

0.491
  coiA Streptococcus pneumoniae R6

49.521

99.051

0.491
  coiA Streptococcus pneumoniae TIGR4

49.521

99.051

0.491
  coiA Lactococcus lactis subsp. cremoris KW2

43.168

100

0.44