Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RDV49_RS08910 Genome accession   NZ_CP133988
Coordinates   1852682..1854484 (-) Length   600 a.a.
NCBI ID   WP_003006387.1    Uniprot ID   A0AAX4AWL5
Organism   Streptococcus parasanguinis strain B-1756     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1847682..1859484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV49_RS08895 (RDV49_08895) - 1850205..1850690 (-) 486 WP_023917679.1 LURP-one-related/scramblase family protein -
  RDV49_RS08900 (RDV49_08900) prsA 1850944..1851888 (-) 945 WP_003006393.1 peptidylprolyl isomerase PrsA -
  RDV49_RS08905 (RDV49_08905) - 1851961..1852680 (-) 720 WP_003006390.1 O-methyltransferase -
  RDV49_RS08910 (RDV49_08910) pepF 1852682..1854484 (-) 1803 WP_003006387.1 oligoendopeptidase F Regulator
  RDV49_RS08915 (RDV49_08915) coiA 1854557..1855507 (-) 951 WP_003006384.1 competence protein CoiA family protein Machinery gene
  RDV49_RS08920 (RDV49_08920) - 1855581..1856162 (-) 582 WP_003006381.1 hypothetical protein -
  RDV49_RS08925 (RDV49_08925) - 1856330..1857502 (-) 1173 WP_003006378.1 MFS transporter -
  RDV49_RS08930 (RDV49_08930) - 1857561..1858919 (-) 1359 WP_003006375.1 DUF1958 domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69093.96 Da        Isoelectric Point: 4.6237

>NTDB_id=878175 RDV49_RS08910 WP_003006387.1 1852682..1854484(-) (pepF) [Streptococcus parasanguinis strain B-1756]
MVKQRNEIDEKYQWDLSTIFATDQAWEEEAASLAADIKAASHYAGHLLDSAQTLLDTTNAYLELSRRLEKVYVYAHMKND
QDTRVAKYQEYQSKGMSLYSLLGETFAFYEPEFMAITDEQYKAFVSEVPALEQYGHYFDRLLEKKEHVLSQKEEELLAGA
GEIFAAGGETFEILDNADIVFPTVHDDKGEEVQLTHGNYISLVESKDRAVRKEAYEGLYKVYEQYQHTYAKTLQTNVKVH
NFNAKVRKFSSAREAALSENFVPESVYDSLVAAVNKHLPLLQRYVQLRSKILGISDLKMYDMYTPLSDTDYKFTYEESLA
KAEEVLAVLGEDYLSRVKRAFSERWIDVHVNQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTERLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGTVLTSEF
LNNLYAELNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGTQEDRGKYIDYLKAGNSDYPL
NVIRKAGVDMEKEDYLDAAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=878175 RDV49_RS08910 WP_003006387.1 1852682..1854484(-) (pepF) [Streptococcus parasanguinis strain B-1756]
ATGGTAAAACAACGTAATGAAATTGATGAAAAATACCAATGGGATTTGTCGACAATTTTTGCGACAGATCAAGCTTGGGA
AGAAGAAGCAGCAAGCTTAGCTGCAGATATTAAAGCAGCAAGCCACTATGCTGGCCATTTGTTGGATTCAGCGCAAACAC
TGTTGGATACAACCAATGCATATTTGGAATTGAGCCGTCGCTTAGAAAAGGTCTACGTCTATGCTCATATGAAAAATGAC
CAAGATACACGAGTGGCTAAATACCAAGAGTACCAATCAAAAGGGATGTCTCTTTATAGCTTGTTAGGTGAAACCTTTGC
CTTCTATGAGCCTGAATTCATGGCCATTACGGATGAGCAATACAAAGCCTTTGTGAGTGAGGTTCCAGCCTTAGAACAAT
ATGGTCATTATTTTGATCGTTTGCTAGAGAAAAAAGAACATGTCTTGTCTCAAAAAGAAGAGGAATTACTTGCAGGAGCT
GGTGAGATCTTTGCGGCAGGTGGTGAAACTTTTGAAATCTTGGACAATGCAGATATTGTTTTCCCAACTGTACATGATGA
CAAGGGCGAAGAAGTTCAATTAACCCATGGAAACTATATTTCTTTGGTAGAATCAAAAGATCGTGCCGTTCGTAAAGAAG
CTTACGAAGGTCTCTACAAGGTCTATGAACAGTACCAACATACCTATGCTAAAACCTTGCAAACCAATGTGAAAGTTCAC
AACTTTAATGCCAAAGTTCGCAAATTCTCATCTGCCCGTGAAGCGGCTCTTTCTGAAAACTTTGTACCAGAAAGTGTTTA
TGATAGCTTGGTAGCAGCTGTGAACAAACATTTGCCACTCTTGCAACGCTATGTGCAATTGCGTTCAAAAATTCTTGGAA
TCTCAGACTTGAAGATGTACGATATGTATACGCCATTATCCGATACAGACTACAAGTTTACCTATGAAGAATCATTGGCC
AAAGCAGAAGAAGTCTTGGCTGTTTTGGGTGAGGACTACCTTTCTCGTGTAAAACGAGCCTTCAGCGAACGGTGGATTGA
TGTGCATGTCAACCAAGGAAAACGCTCAGGTGCTTATTCAGGTGGTTCTTATGATACCAATGCCTTCATGTTGTTGAACT
GGCAAGATACATTGGATAATCTCTTCACCTTGGTGCATGAAACTGGTCACAGTATGCATTCTAGCTATACCCGTGAAACC
CAGCCTTACGTCTATGGGGACTATTCCATCTTCCTTGCTGAAATCGCCTCTACAACCAATGAAAATATCCTGACTGAACG
TCTGTTAGAAGAAGTAGAAGACGATGCAACTCGCTTTGCTATTTTGAATCACTTCTTGGATGGCTTCCGTGGAACTGTCT
TCCGTCAAACGCAGTTTGCTGAATTTGAGCATGCTATCCATAAAGCAGACCAAGAAGGTACCGTTTTGACTAGTGAATTC
TTAAACAACCTCTATGCAGAGCTCAATGAAAAATACTATGGCCTTTCAAAAGAAGACAACCCTGAGATCCAATATGAATG
GGCTCGGATTCCTCACTTCTACTATAACTACTATGTCTTCCAATATTCAACAGGTTTTGCAGCAGCTTCAGCCTTAGCTG
AAAAGATTGTTCATGGAACACAAGAAGATCGTGGTAAATATATCGACTACTTGAAGGCTGGAAATTCTGACTATCCACTC
AATGTCATCCGCAAAGCAGGTGTGGATATGGAAAAAGAAGACTACTTGGACGCAGCCTTTGCGGTCTTTGAACGTCGGTT
GAATGAATTTGAAGCCCTAGTAGAAAAATTAGGACTCGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.631

99.333

0.692