Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QQE96_RS19320 Genome accession   NZ_CP133987
Coordinates   2999112..2999642 (-) Length   176 a.a.
NCBI ID   WP_053308830.1    Uniprot ID   A0A7X6N706
Organism   Vibrio aestuarianus subsp. francensis strain LC_Sco     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2994112..3004642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQE96_RS19300 (QQE96_19355) - 2994568..2994894 (-) 327 WP_168523519.1 MSHA biogenesis protein MshK -
  QQE96_RS19305 (QQE96_19360) gspM 2994884..2995528 (-) 645 WP_168523521.1 type II secretion system protein GspM -
  QQE96_RS19310 (QQE96_19365) - 2995528..2996967 (-) 1440 WP_168523523.1 MSHA biogenesis protein MshI -
  QQE96_RS19315 (QQE96_19370) csrD 2996980..2998968 (-) 1989 WP_168523525.1 RNase E specificity factor CsrD -
  QQE96_RS19320 (QQE96_19375) ssb 2999112..2999642 (-) 531 WP_053308830.1 single-stranded DNA-binding protein Machinery gene
  QQE96_RS19325 (QQE96_19380) qstR 2999952..3000599 (+) 648 WP_168523527.1 LuxR C-terminal-related transcriptional regulator Regulator
  QQE96_RS19330 (QQE96_19385) galU 3000718..3001587 (+) 870 WP_168523529.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QQE96_RS19335 (QQE96_19390) uvrA 3001785..3004607 (+) 2823 WP_168524077.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19391.53 Da        Isoelectric Point: 5.2358

>NTDB_id=878126 QQE96_RS19320 WP_053308830.1 2999112..2999642(-) (ssb) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
MASRGVNKVILVGNLGNDPEIRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMPQSQQQGGWGQPQQPAMQQQPQKQQSAPQQAQ
PQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=878126 QQE96_RS19320 WP_053308830.1 2999112..2999642(-) (ssb) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
ATGGCAAGCCGTGGAGTAAATAAAGTTATTTTAGTGGGTAACCTAGGTAACGACCCAGAAATTCGTTATATGCCAAGTGG
CGGTGCTGTGGCAAATATCACCATCGCAACGTCAGAGTCATGGCGTGATAAAGCAACAGGTGAGCAACGTGAAAAAACCG
AATGGCACCGTGTTGCACTATTTGGCAAATTAGCTGAAGTCGCTGGTGAATACTTGCGTAAAGGTTCACAGGTTTATATC
GAAGGCCAATTACAAACGCGTAAGTGGCAAGATCAAAGTGGCCAAGACCGTTATACAACAGAAGTTGTTGTTCAAGGTTT
TAACGGCGTGATGCAAATGTTAGGTGGTCGTGCACAAGGCGGTGCACCTGCTCAAGGTGGTATGCCTCAGTCTCAGCAAC
AAGGTGGATGGGGACAACCTCAACAACCAGCGATGCAGCAACAACCTCAGAAGCAGCAGTCGGCACCTCAACAGGCTCAG
CCACAATATAACGAGCCACCGATGGATTTTGATGACGACATCCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X6N706

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

87.079

100

0.881
  ssb Glaesserella parasuis strain SC1401

55.08

100

0.585
  ssb Neisseria meningitidis MC58

46.893

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.893

100

0.472