Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   QQE96_RS19325 Genome accession   NZ_CP133987
Coordinates   2999952..3000599 (+) Length   215 a.a.
NCBI ID   WP_168523527.1    Uniprot ID   -
Organism   Vibrio aestuarianus subsp. francensis strain LC_Sco     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2994952..3005599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQE96_RS19310 (QQE96_19365) - 2995528..2996967 (-) 1440 WP_168523523.1 MSHA biogenesis protein MshI -
  QQE96_RS19315 (QQE96_19370) csrD 2996980..2998968 (-) 1989 WP_168523525.1 RNase E specificity factor CsrD -
  QQE96_RS19320 (QQE96_19375) ssb 2999112..2999642 (-) 531 WP_053308830.1 single-stranded DNA-binding protein Machinery gene
  QQE96_RS19325 (QQE96_19380) qstR 2999952..3000599 (+) 648 WP_168523527.1 LuxR C-terminal-related transcriptional regulator Regulator
  QQE96_RS19330 (QQE96_19385) galU 3000718..3001587 (+) 870 WP_168523529.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QQE96_RS19335 (QQE96_19390) uvrA 3001785..3004607 (+) 2823 WP_168524077.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24778.28 Da        Isoelectric Point: 9.7695

>NTDB_id=878127 QQE96_RS19325 WP_168523527.1 2999952..3000599(+) (qstR) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
MRKANYTRTIYFLCLDAQRSSPYIEQLTSLLALPIPKIEPEALRQSSGFDKHKILMIDYGNYVQLRQRLGNSPLNSNHHE
TILFNVSQRLTTDELLTFGHLKGLFYRSDSFESIAHGLGEIINGQNWLPRHVTSQLLHYYRYTFESHTAQVITDLTAREV
QILRSLQTGASNSQMAESLFISEFTVKSHLYQIFKKLSVKKRSQAIAWANQNILS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=878127 QQE96_RS19325 WP_168523527.1 2999952..3000599(+) (qstR) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
ATGAGAAAAGCCAACTACACCCGCACCATTTATTTTTTGTGTTTAGATGCTCAAAGATCCTCACCCTATATCGAACAGCT
TACCTCGCTATTAGCGCTACCGATCCCCAAAATAGAGCCAGAAGCACTGCGCCAATCTAGCGGTTTTGATAAACATAAAA
TACTAATGATTGATTACGGTAACTATGTACAACTTAGGCAACGGTTAGGCAATAGCCCACTAAACAGCAATCACCACGAA
ACGATATTATTCAATGTATCACAGCGTCTTACCACCGATGAATTGCTCACCTTTGGTCATTTAAAAGGGCTATTTTACCG
TAGCGATAGTTTCGAAAGCATCGCACATGGACTCGGTGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCACCA
GTCAATTACTGCATTATTATCGTTATACTTTTGAGTCTCATACTGCACAGGTCATTACCGATTTAACCGCCCGCGAGGTG
CAAATTTTGCGTAGCCTTCAAACCGGAGCATCCAACAGTCAGATGGCTGAAAGTCTGTTCATTAGTGAGTTCACCGTAAA
GTCTCATCTTTATCAAATATTCAAAAAACTCTCGGTAAAAAAACGCTCACAAGCGATCGCCTGGGCAAATCAAAACATAC
TGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

63.551

99.535

0.633
  qstR Vibrio parahaemolyticus RIMD 2210633

54.884

100

0.549
  qstR Vibrio campbellii strain DS40M4

54.419

100

0.544