Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RHO14_RS05100 Genome accession   NZ_CP133967
Coordinates   1091200..1091694 (-) Length   164 a.a.
NCBI ID   WP_392553232.1    Uniprot ID   -
Organism   Orbus wheelerorum strain lpD04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1086200..1096694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHO14_RS05080 (RHO14_05040) lpxK 1088403..1089374 (+) 972 WP_392553229.1 tetraacyldisaccharide 4'-kinase -
  RHO14_RS05085 (RHO14_05045) - 1089403..1089582 (+) 180 WP_392553230.1 Trm112 family protein -
  RHO14_RS05090 (RHO14_05050) kdsB 1089579..1090331 (+) 753 WP_392553231.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RHO14_RS05095 (RHO14_05055) - 1090363..1091058 (+) 696 WP_392553587.1 DUF2461 domain-containing protein -
  RHO14_RS05100 (RHO14_05060) ssb 1091200..1091694 (-) 495 WP_392553232.1 single-stranded DNA-binding protein Machinery gene
  RHO14_RS05105 (RHO14_05065) ubiG 1091890..1092591 (-) 702 WP_392553233.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  RHO14_RS05110 (RHO14_05070) - 1092624..1093229 (-) 606 WP_392553234.1 NUDIX hydrolase -
  RHO14_RS05115 (RHO14_05075) - 1093378..1095873 (+) 2496 WP_392553235.1 class I adenylate cyclase -
  RHO14_RS05120 (RHO14_05080) rpoE 1096024..1096596 (+) 573 WP_392553236.1 RNA polymerase sigma factor RpoE -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17902.77 Da        Isoelectric Point: 4.9562

>NTDB_id=878054 RHO14_RS05100 WP_392553232.1 1091200..1091694(-) (ssb) [Orbus wheelerorum strain lpD04]
MANRGINKVILVGNLGQDPEVRYLPNGGAVANISIATSETWKDKQTGEQKDKTEWHRVVIFGKLAEIAGEYLKKGSQVYI
EGQLQTRKWQDQSGQDKYTTEVVVNIGGTLQILGGRGTNSTDDAPQQNWGQSSNNSSSAPSRQAPAQKAPANEPPMDFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=878054 RHO14_RS05100 WP_392553232.1 1091200..1091694(-) (ssb) [Orbus wheelerorum strain lpD04]
ATGGCAAATCGGGGAATAAATAAAGTTATTTTAGTTGGTAATTTAGGACAAGATCCTGAAGTCCGTTATTTACCTAATGG
TGGTGCTGTTGCGAATATAAGTATTGCCACTTCTGAAACGTGGAAAGACAAACAAACAGGTGAACAAAAAGATAAAACCG
AATGGCACCGAGTTGTCATCTTTGGTAAACTTGCTGAAATTGCTGGTGAATATCTAAAAAAAGGTTCACAAGTATATATT
GAAGGTCAGCTACAAACACGTAAGTGGCAAGATCAATCTGGTCAAGATAAATATACAACTGAGGTTGTGGTTAATATTGG
TGGTACTCTACAAATTCTTGGTGGACGTGGTACTAATTCTACCGATGATGCCCCACAACAAAATTGGGGACAGAGCTCAA
ACAATAGCTCATCAGCTCCTTCACGACAAGCTCCGGCTCAAAAAGCGCCAGCTAACGAACCACCAATGGATTTTGATGAC
GATATACCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

65

100

0.713
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.579
  ssb Neisseria meningitidis MC58

47.727

100

0.512
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.506
  ssb Latilactobacillus sakei subsp. sakei 23K

34.286

100

0.366