Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RHO15_RS09490 Genome accession   NZ_CP133959
Coordinates   2096904..2098436 (+) Length   510 a.a.
NCBI ID   WP_392565783.1    Uniprot ID   -
Organism   Utexia brackfieldae strain lpD01     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2091904..2103436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHO15_RS09470 (RHO15_09405) mepM 2092614..2094056 (-) 1443 WP_392565779.1 murein DD-endopeptidase MepM -
  RHO15_RS09475 (RHO15_09410) znuA 2094076..2095041 (-) 966 WP_392565780.1 zinc ABC transporter substrate-binding protein ZnuA -
  RHO15_RS09480 (RHO15_09415) znuC 2095127..2095885 (+) 759 WP_392565781.1 zinc ABC transporter ATP-binding protein ZnuC -
  RHO15_RS09485 (RHO15_09420) znuB 2095878..2096663 (+) 786 WP_392565782.1 zinc ABC transporter permease subunit ZnuB -
  RHO15_RS09490 (RHO15_09425) comM 2096904..2098436 (+) 1533 WP_392565783.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RHO15_RS09495 (RHO15_09430) - 2098450..2098788 (-) 339 WP_392565784.1 DUF413 domain-containing protein -
  RHO15_RS09505 (RHO15_09440) - 2099298..2100245 (-) 948 WP_392565785.1 DUF808 domain-containing protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55845.13 Da        Isoelectric Point: 9.7130

>NTDB_id=878028 RHO15_RS09490 WP_392565783.1 2096904..2098436(+) (comM) [Utexia brackfieldae strain lpD01]
MSTATIYTRASIGIQAPLIQVEIHISNGLPGFTLVGLPETSVKEAKDRVRSAILNSGYTFPSKRITVNLSPADLPKEGSR
FDLPIALAILAATNQISGQSLSQYEFLGELALSGQIRLIKGVIPAALAASYDKRMLITSVENSAEIALIADHSHRLAQSL
ADIGQFLSGNETTLQKPQNDLINQLTLPQESDSLDDIIGQEHAKRALEIAAAGGHNILLIGPPGTGKTMLAMRLNGLLPQ
LSNSEALETASINSLINNYIPLQNWRKRPFRAPHHSASTAALVGGGTIPKPGEISLAHNGVLFLDELPEFSRKVLDALRE
PLESGEIVISRAKNKVSFPAKVQLVAAMNPSPTGHYQGMHNRTNPQQIMRYLNRLSGPFLDRFDLSIEVPLLPKGLLSKQ
KQKTVDTAAIKNNVLKARDKQIKIRGKINADLNNQEITKFCQLYQSDADFLENALNKLGLSARAWHRILKVSRTIADLAD
SEHIERYHLAEALSYRSMDRLLLELHKNAN

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=878028 RHO15_RS09490 WP_392565783.1 2096904..2098436(+) (comM) [Utexia brackfieldae strain lpD01]
ATGTCTACAGCGACGATTTATACCCGGGCTTCAATTGGGATTCAGGCCCCACTCATTCAGGTCGAAATTCATATTAGTAA
TGGATTGCCCGGATTTACTTTAGTGGGTCTGCCAGAAACCAGTGTCAAAGAGGCCAAAGATCGCGTTCGAAGTGCAATAC
TCAACAGCGGCTATACCTTTCCATCGAAACGAATTACCGTCAATCTCTCCCCAGCTGATTTACCTAAAGAGGGAAGTCGC
TTTGATCTCCCTATAGCATTGGCCATTTTGGCCGCAACCAATCAAATTTCCGGGCAATCACTGTCTCAATATGAGTTTCT
AGGTGAACTGGCACTATCTGGCCAGATTCGATTAATCAAAGGCGTTATTCCAGCGGCACTAGCCGCTAGCTATGATAAAC
GTATGCTGATTACCAGTGTCGAAAATAGTGCGGAGATAGCATTAATTGCAGATCATTCACATAGGTTGGCACAATCACTA
GCCGATATTGGCCAATTTCTGTCTGGAAACGAGACAACGCTTCAAAAACCGCAAAACGATCTGATTAATCAATTAACACT
ACCGCAAGAGTCCGATAGCCTAGATGATATCATCGGTCAGGAACATGCCAAAAGAGCATTGGAAATTGCCGCCGCCGGTG
GTCATAATATATTATTAATTGGTCCTCCCGGTACGGGTAAAACCATGCTTGCCATGCGATTGAACGGTCTACTGCCACAG
CTGAGTAATAGTGAGGCCCTGGAAACGGCATCAATCAATAGCCTAATCAATAATTATATACCATTGCAAAACTGGCGAAA
GAGACCTTTCCGCGCCCCTCATCATAGCGCATCAACGGCGGCATTGGTTGGCGGAGGTACAATACCTAAACCCGGAGAAA
TCTCTTTAGCACATAATGGCGTACTCTTTCTCGATGAGCTCCCAGAATTTAGCCGAAAAGTTCTCGATGCCTTAAGAGAA
CCATTAGAGTCAGGTGAAATAGTGATATCCAGAGCCAAAAATAAGGTGAGCTTTCCGGCAAAGGTTCAGTTAGTGGCCGC
TATGAACCCCAGCCCAACTGGACATTATCAAGGTATGCATAATAGAACCAATCCACAGCAGATCATGCGCTACCTTAACC
GGTTATCCGGCCCCTTTCTGGATAGGTTTGATTTATCAATTGAAGTCCCGTTATTACCTAAAGGTTTACTTAGCAAGCAA
AAACAGAAAACGGTAGATACTGCGGCGATAAAGAATAATGTCTTAAAAGCGAGAGACAAACAGATTAAGATAAGAGGAAA
AATTAATGCAGATCTGAATAATCAGGAGATTACTAAATTTTGTCAGCTTTATCAATCTGATGCAGATTTTTTAGAGAATG
CATTAAATAAATTAGGATTATCTGCCAGGGCCTGGCATCGAATATTGAAGGTATCAAGGACTATTGCAGATTTAGCTGAC
TCAGAACATATAGAGCGATATCACCTAGCCGAAGCGCTAAGTTATCGCTCTATGGACCGCTTACTACTCGAGTTACATAA
AAACGCCAATTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-137)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.405

100

0.635
  comM Glaesserella parasuis strain SC1401

62.891

100

0.631
  comM Vibrio campbellii strain DS40M4

61.644

100

0.618
  comM Vibrio cholerae strain A1552

61.782

99.02

0.612
  comM Legionella pneumophila str. Paris

50.797

98.431

0.5
  comM Legionella pneumophila strain ERS1305867

50.797

98.431

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.85

99.216

0.455