Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RHO11_RS11750 Genome accession   NZ_CP133958
Coordinates   2488834..2490357 (-) Length   507 a.a.
NCBI ID   WP_392559065.1    Uniprot ID   -
Organism   Orbus mooreae strain BiB     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2483834..2495357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHO11_RS11745 (RHO11_11710) - 2488492..2488830 (+) 339 WP_392559064.1 DUF413 domain-containing protein -
  RHO11_RS11750 (RHO11_11715) comM 2488834..2490357 (-) 1524 WP_392559065.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RHO11_RS11755 (RHO11_11720) znuB 2490511..2491311 (-) 801 WP_392559066.1 zinc ABC transporter permease subunit ZnuB -
  RHO11_RS11760 (RHO11_11725) znuC 2491304..2492077 (-) 774 WP_392559067.1 zinc ABC transporter ATP-binding protein ZnuC -
  RHO11_RS11765 (RHO11_11730) znuA 2492153..2493091 (+) 939 WP_392559068.1 zinc ABC transporter substrate-binding protein ZnuA -
  RHO11_RS11770 (RHO11_11735) mepM 2493125..2494534 (+) 1410 WP_392559069.1 murein DD-endopeptidase MepM -
  RHO11_RS11775 (RHO11_11740) sfsA 2494524..2495234 (-) 711 WP_392559070.1 DNA/RNA nuclease SfsA -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 56114.72 Da        Isoelectric Point: 9.4407

>NTDB_id=878014 RHO11_RS11750 WP_392559065.1 2488834..2490357(-) (comM) [Orbus mooreae strain BiB]
MSLFTIYTRACIGIQAPKIDVEIHISNGMPSFTLVGLPEASVKEAKDRVRSALINSGFNFPSKKITINLSPADLPKEGSR
FDLPIAIAILAATEQINVTTLHNYEFLGELALSGEIRSVKGAIPAAISAQDSGRQLILSIENRTEIALINNNNTLTCHNL
IEISQHFSEQLVISPVTYQIPNEVDFMTSDLKDVIGQEHAKRVLEISAAGGHNLLLIGPPGTGKTMLATRLADLLPELTD
KESLETAAITSLANQTCHIKNWRRRPFRAPHHSASTAALVGGGTIPKPGEISLAHNGILFLDELPEFNRKVLDALREPLE
SGEIVISRANAKITFPAKVQLIAAMNPSPTGHYQGIHNRTPTQQVIRYLNRLSGPFLDRFDLSIEVPLLPKGSLSQNKPT
GESSKEIRLRIIKARNRQIERCKKINSALSTKEINKYCKLSDEDNLFLEQALIKLGLSVRAWHRILKVSRTIADLEDRRD
IERKHLTEALSYRSMDKLLIQLHKNIG

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=878014 RHO11_RS11750 WP_392559065.1 2488834..2490357(-) (comM) [Orbus mooreae strain BiB]
ATGTCACTTTTTACGATTTATACTCGGGCATGTATTGGTATACAAGCGCCCAAAATTGATGTTGAGATTCATATTAGTAA
TGGTATGCCTAGTTTTACTTTAGTTGGTCTACCTGAAGCCTCTGTGAAAGAAGCAAAAGATCGCGTAAGAAGTGCATTAA
TTAATAGTGGTTTTAACTTTCCATCAAAAAAAATCACCATTAATCTTTCTCCAGCGGATCTGCCTAAAGAAGGTAGCCGT
TTTGATTTACCAATCGCAATTGCAATACTTGCTGCCACCGAACAAATTAACGTAACAACATTACACAATTATGAATTTTT
AGGTGAACTGGCTCTATCTGGTGAGATTCGTTCAGTAAAAGGGGCGATTCCTGCAGCTATCTCAGCTCAGGACAGTGGTA
GGCAATTAATCTTATCTATCGAAAATAGAACAGAGATAGCTTTAATAAATAATAATAACACCCTAACTTGTCATAATTTA
ATTGAAATTAGTCAGCATTTTTCAGAACAGTTAGTAATCTCGCCCGTCACTTATCAAATACCTAATGAAGTCGATTTTAT
GACGAGTGATCTCAAAGACGTTATTGGTCAAGAGCATGCAAAACGCGTATTAGAAATATCGGCAGCTGGCGGTCATAATT
TGTTGCTAATTGGCCCACCAGGTACAGGAAAGACAATGTTGGCAACAAGACTTGCGGATCTATTACCAGAATTAACAGAT
AAAGAATCACTAGAAACAGCGGCGATAACCAGTCTTGCTAATCAAACCTGTCACATTAAAAACTGGCGTAGACGTCCATT
TAGGGCACCACACCATAGCGCATCAACGGCGGCTTTAGTCGGGGGAGGAACAATACCGAAACCAGGAGAAATATCATTGG
CACATAATGGCATTCTTTTTTTAGATGAGCTACCTGAATTTAATCGTAAAGTTCTCGATGCATTAAGAGAACCACTCGAA
TCAGGAGAAATTGTTATCTCAAGGGCAAATGCCAAAATTACATTTCCCGCTAAAGTCCAATTAATCGCAGCAATGAATCC
GAGTCCAACAGGACACTATCAAGGTATTCATAATCGTACTCCTACACAACAAGTTATTCGTTACCTAAATCGACTATCAG
GACCATTTTTAGACCGATTTGATCTCTCGATTGAAGTGCCTTTACTACCGAAAGGATCGCTAAGTCAAAATAAACCCACT
GGTGAATCAAGTAAAGAGATTAGACTGCGGATAATCAAAGCCAGAAATAGACAAATAGAACGGTGTAAAAAAATTAATAG
TGCACTATCGACTAAAGAGATCAATAAATATTGTAAATTAAGTGATGAAGATAATCTATTTCTAGAACAAGCACTAATCA
AATTGGGATTATCAGTAAGAGCGTGGCATCGAATCTTAAAAGTATCGAGAACAATTGCTGATTTAGAAGATAGAAGAGAT
ATAGAACGAAAGCATCTCACTGAGGCGTTAAGCTATCGTTCTATGGATAAATTACTAATACAGTTACATAAAAATATCGG
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

62.327

100

0.623
  comM Glaesserella parasuis strain SC1401

61.933

100

0.619
  comM Vibrio cholerae strain A1552

59.172

100

0.592
  comM Vibrio campbellii strain DS40M4

57.937

99.408

0.576
  comM Legionella pneumophila str. Paris

50.1

98.817

0.495
  comM Legionella pneumophila strain ERS1305867

50.1

98.817

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

99.803

0.462