Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RHO11_RS04610 Genome accession   NZ_CP133958
Coordinates   983485..983976 (+) Length   163 a.a.
NCBI ID   WP_392560264.1    Uniprot ID   -
Organism   Orbus mooreae strain BiB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 978485..988976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHO11_RS04595 (RHO11_04590) - 979324..981810 (-) 2487 WP_392560261.1 class I adenylate cyclase -
  RHO11_RS04600 (RHO11_04595) - 981949..982557 (+) 609 WP_392560262.1 NUDIX hydrolase -
  RHO11_RS04605 (RHO11_04600) ubiG 982589..983290 (+) 702 WP_392560263.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  RHO11_RS04610 (RHO11_04605) ssb 983485..983976 (+) 492 WP_392560264.1 single-stranded DNA-binding protein Machinery gene
  RHO11_RS04620 (RHO11_04615) - 984556..985314 (+) 759 WP_392560265.1 MlaA family lipoprotein -
  RHO11_RS04625 (RHO11_04620) recO 985355..986047 (-) 693 WP_392560266.1 DNA repair protein RecO -
  RHO11_RS04630 (RHO11_04625) - 986160..987797 (+) 1638 WP_392560267.1 Na+/H+ antiporter -
  RHO11_RS04635 (RHO11_04630) - 987823..988314 (+) 492 WP_392560268.1 SCP2 domain-containing protein -
  RHO11_RS04640 (RHO11_04635) - 988388..988621 (-) 234 WP_392560269.1 SemiSWEET family transporter -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17807.73 Da        Isoelectric Point: 4.9658

>NTDB_id=878005 RHO11_RS04610 WP_392560264.1 983485..983976(+) (ssb) [Orbus mooreae strain BiB]
MASRGINKVILVGNLGQDPEIRYLPNGGAVANISIATSETWKDKQTGEQKDKTEWHRVVIFGKLAEIAGEYLKKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVNIGGTLQILGSRGSSEDMSAQNWGQSSNNNSSAPAARKAPAQQAPANEPPMDFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=878005 RHO11_RS04610 WP_392560264.1 983485..983976(+) (ssb) [Orbus mooreae strain BiB]
ATGGCAAGTCGAGGAATAAATAAAGTCATTTTAGTCGGCAATTTAGGACAAGATCCAGAAATCCGTTATTTACCAAATGG
TGGTGCAGTTGCCAATATCAGTATCGCGACTTCCGAAACTTGGAAAGATAAACAAACTGGTGAACAAAAAGATAAGACAG
AATGGCACAGAGTGGTTATTTTTGGCAAACTAGCGGAAATCGCCGGTGAATATCTAAAAAAAGGTTCACAAGTCTATATT
GAAGGTCAGTTACAAACCCGTAAATGGCAGGATCAATCTGGTCAAGATCGATACACAACTGAAGTCGTTGTAAATATTGG
TGGGACGTTACAAATTCTTGGCAGTCGTGGTAGCAGTGAAGATATGTCAGCCCAAAATTGGGGACAAAGTTCCAATAACA
ATTCATCTGCACCAGCTGCACGTAAAGCCCCAGCACAACAAGCTCCAGCGAATGAACCGCCAATGGATTTTGATGACGAT
ATTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

66.667

100

0.724
  ssb Glaesserella parasuis strain SC1401

53.039

100

0.589
  ssb Neisseria meningitidis MC58

45.455

100

0.491
  ssb Neisseria gonorrhoeae MS11

44.886

100

0.485
  ssb Latilactobacillus sakei subsp. sakei 23K

34.857

100

0.374