Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RHN62_RS08845 Genome accession   NZ_CP133937
Coordinates   1887015..1888544 (-) Length   509 a.a.
NCBI ID   WP_310549532.1    Uniprot ID   -
Organism   Pasteurella multocida strain AKS2021-HT3     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1882015..1893544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHN62_RS08825 - 1883320..1884003 (-) 684 WP_005718066.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  RHN62_RS08830 envC 1884186..1885415 (+) 1230 WP_241951327.1 murein hydrolase activator EnvC -
  RHN62_RS08835 - 1885412..1886254 (+) 843 WP_241951328.1 divergent polysaccharide deacetylase family protein -
  RHN62_RS08840 - 1886275..1886961 (+) 687 WP_241951329.1 hypothetical protein -
  RHN62_RS08845 comM 1887015..1888544 (-) 1530 WP_310549532.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RHN62_RS08850 yihA 1888652..1889269 (-) 618 WP_005718080.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  RHN62_RS08855 - 1889380..1890249 (+) 870 WP_310549533.1 VirK/YbjX family protein -
  RHN62_RS08860 trmL 1890324..1890800 (-) 477 WP_064965341.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  RHN62_RS08865 - 1890907..1891866 (-) 960 WP_310549534.1 hypothetical protein -
  RHN62_RS08870 - 1891890..1893410 (-) 1521 WP_310549535.1 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55960.43 Da        Isoelectric Point: 9.8013

>NTDB_id=877588 RHN62_RS08845 WP_310549532.1 1887015..1888544(-) (comM) [Pasteurella multocida strain AKS2021-HT3]
MSLAIVYSRASMGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGQIDPQKLQQFEFVGELALTGDLRAVHGVIPAILAAQKAKRKLIIASQNANEASLVSHQDTYFAQHL
LEVVNFLNDHATLPLASDLPTQHDPALLATTQKDLTDIIGQSHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTLLP
EMNDQEAIETAAVTSLVHHELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTRNRTSPQQILRYLNRLSGPFLDRFDLSIEVPLLPKGALQQ
QTDRGESSAQVREKVLKVREIQLARAGKINAYLTSKEIERDCKISDQDALFLENALAKLGLSVRAYHRILKVARTIADLN
NERQIQQCHLAEALGYRAMDRLLQKLSAM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=877588 RHN62_RS08845 WP_310549532.1 1887015..1888544(-) (comM) [Pasteurella multocida strain AKS2021-HT3]
ATGTCACTTGCAATTGTTTATAGTCGAGCCTCAATGGGCGTACAAGCCCCTTTAGTCACCATTGAGGTGCATTTCAGTAA
TGGTAAACCGCAATTCAACTTAGTCGGCTTACCCGAAAAAACCGTCAAAGAAGCACAAGATCGCGTACGCAGTGCCTTGC
TCAATGCCCAATTTAAATACCCAGCTAAACGGATCACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGCGGACGT
TTTGATTTACCGATCGCCATTGGTATGCTCGCCGCTTCTGGTCAAATTGACCCACAAAAGTTACAGCAATTTGAATTTGT
GGGTGAGTTAGCGCTAACGGGTGATTTACGTGCAGTACATGGCGTCATCCCCGCGATCCTTGCTGCACAAAAAGCCAAGC
GGAAATTGATTATCGCCAGTCAAAATGCCAATGAAGCTTCGTTAGTTTCCCACCAAGACACCTATTTTGCTCAACATTTA
CTAGAGGTCGTCAATTTTCTCAATGATCATGCTACGTTACCTTTAGCCTCAGATCTGCCCACACAACATGATCCGGCCCT
TTTAGCAACAACACAAAAAGATTTAACCGATATTATCGGGCAATCCCATGCTAAACGCGCTTTAACCATTGCTGCCGCAG
GGCAACATAATCTGCTTTTTTTGGGTCCGCCCGGTACAGGAAAGACCATGCTCGCCAGCCGATTAACTACCTTGTTACCG
GAAATGAACGATCAAGAAGCCATTGAAACCGCCGCAGTGACAAGCCTTGTTCATCATGAATTGAATTTTCATAATTGGAA
ACAGCGCCCATTTCGTGCCCCTCATCACAGTGCTTCAACACCGGCTTTAGTAGGGGGCGGCACCATACCCAAACCTGGAG
AAATTTCGCTCGCACACAATGGGGTGTTATTTCTCGATGAGTTACCGGAATTTGAACGTAAAGTATTAGATGCCTTACGT
CAACCTTTGGAAAGTGGTGAAATTATCATTTCGCGTGCCAATGCAAAAATTCAATTCCCCGCTCGTTTTCAATTAATTGC
CGCCATGAATCCTAGCCCAACGGGACATTATCAAGGTACTCGCAATCGCACCTCACCACAACAAATCTTGCGTTATCTCA
ATCGCTTATCCGGTCCGTTTTTAGATCGCTTTGATTTGTCAATCGAAGTCCCTTTACTCCCCAAAGGCGCGTTACAACAG
CAAACAGATCGGGGCGAAAGTAGCGCACAAGTGAGAGAAAAAGTATTAAAAGTACGCGAGATACAACTGGCGCGCGCGGG
AAAAATTAATGCTTATTTGACCAGTAAAGAAATTGAGCGAGACTGTAAGATCAGTGATCAAGATGCGTTATTTTTAGAGA
ATGCCTTAGCCAAATTGGGGTTATCCGTGCGCGCCTATCATCGTATTTTAAAAGTAGCACGCACCATTGCAGACTTAAAT
AATGAACGCCAAATTCAACAATGCCACCTCGCCGAAGCACTAGGTTATCGGGCGATGGATAGGTTGTTACAGAAGTTATC
TGCGATGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.479

100

0.845
  comM Glaesserella parasuis strain SC1401

77.712

99.607

0.774
  comM Vibrio cholerae strain A1552

66.405

100

0.664
  comM Vibrio campbellii strain DS40M4

65.551

99.804

0.654
  comM Legionella pneumophila str. Paris

52

98.232

0.511
  comM Legionella pneumophila strain ERS1305867

52

98.232

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.714

100

0.472