Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RHS39_RS16210 Genome accession   NZ_CP133900
Coordinates   3465140..3466663 (-) Length   507 a.a.
NCBI ID   WP_025789536.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TW01     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3460140..3471663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS39_RS16190 (RHS39_16190) - 3461421..3462407 (+) 987 WP_025789537.1 serine/threonine protein kinase -
  RHS39_RS16195 (RHS39_16195) - 3462442..3463044 (+) 603 WP_005454748.1 thiol:disulfide interchange protein DsbA/DsbL -
  RHS39_RS16200 (RHS39_16200) - 3463086..3463964 (-) 879 WP_020904428.1 acyltransferase -
  RHS39_RS16205 (RHS39_16205) - 3464127..3465083 (+) 957 WP_025545591.1 DUF2860 domain-containing protein -
  RHS39_RS16210 (RHS39_16210) comM 3465140..3466663 (-) 1524 WP_025789536.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RHS39_RS16215 (RHS39_16215) ilvG 3467128..3468774 (+) 1647 WP_005461385.1 acetolactate synthase 2 catalytic subunit -
  RHS39_RS16220 (RHS39_16220) ilvM 3468785..3469069 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  RHS39_RS16225 (RHS39_16225) ilvE 3469082..3470020 (+) 939 WP_025789535.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55007.09 Da        Isoelectric Point: 9.0357

>NTDB_id=877450 RHS39_RS16210 WP_025789536.1 3465140..3466663(-) (comM) [Vibrio parahaemolyticus strain TW01]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQVATDRLKNYEFVGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNGDQAALVSKEQHKSAQSL
LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPSLPKGTLAEGGDR
GEPTELVKERVSLARESMLNRNGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAEQ
IKRSHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=877450 RHS39_RS16210 WP_025789536.1 3465140..3466663(-) (comM) [Vibrio parahaemolyticus strain TW01]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCACCGTCAGTTAGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA
TCAACTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCCCCGGCGGATTTACCTAAAGAAGGCGGACGT
TTTGATTTGCCTATCGCATTGGGTATTTTGGCGGCTTCAGAGCAAGTCGCGACAGATAGGCTCAAAAACTACGAATTTGT
TGGCGAATTAGCCCTGTCTGGAGGATTAAGACCTGTCAAAGGTGTGCTTCCTGCCGCGTTGGCTGCAAGCAAAGTAGGAC
GTCATTTGGTGGTGCCTCATGTCAATGGCGATCAAGCGGCACTGGTGAGCAAAGAGCAACATAAGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAGCA
TGGTCGAGATCTACAAGACATCATTGGCCAGCAACAAGGCAAGCGTGCACTAGAAATTGCGGCGGCTGGAAACCACAACC
TACTTTTCCTTGGTCCTCCTGGTACAGGAAAAACCATGCTGGCGTCGCGTTTATGCGACTTACTGCCGGAGATGAGCGAC
GAAGAAGCGATGGAAACGGCTTCAGTCGCATCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAAGTCGCGTCCGTT
TCGTGCGCCGCACCATTCCAGTTCGATGGCTGCATTAGTTGGTGGTGGCTCGGTGCCAAGACCGGGAGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAATGCCGGAGTTTGACCGTAAAGTGTTGGACTCGTTACGAGAGCCACTGGAA
TCGGGTGAGATCATCATTTCGCGCGCACAAGGAAAAACGCGTTTTCCTGCTCGTTTTCAGCTGGTGGGCGCGTTGAATCC
AAGCCCAACTGGCTATTACGAAGGGAATCAAGCTCGCACTAACCCTCAAGCTATTTTGCGTTACTTAGGTCGTTTATCGG
GACCGCTTCTCGACCGTTTTGATATGTCGTTAGAAATTCCATCCTTACCGAAAGGCACGTTGGCGGAAGGTGGTGACCGA
GGTGAACCCACGGAACTCGTTAAAGAGCGCGTCAGTCTTGCTCGCGAGAGCATGCTCAATCGAAACGGCAAAGTAAACGC
ACTACTCGGCAGCCGTGAAATTGAGGCATTTTGCCCGTTGCAAAAAAGCGATGCGGAATTTCTCGAAACTGCACTCCATC
GGCTGGGGTTATCGATTCGTGCCTATCATCGCATCATTAAAGTGGCTCGCACGATAGCGGATTTAGAAGGTGCTGAGCAG
ATTAAGCGTTCTCATTTGGCGGAAGCGCTCGGGTATCGCGCGATGGATCGATTGCTGAAACAACTCACGGCTCAAGCCGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

93.688

100

0.937
  comM Vibrio cholerae strain A1552

84.418

100

0.844
  comM Haemophilus influenzae Rd KW20

66.469

100

0.665
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

49.395

97.83

0.483
  comM Legionella pneumophila strain ERS1305867

49.395

97.83

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.898

100

0.44