Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RHS39_RS14345 Genome accession   NZ_CP133900
Coordinates   3076110..3076640 (-) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain TW01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3071110..3081640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS39_RS14325 (RHS39_14325) - 3071434..3071763 (-) 330 WP_005481006.1 MSHA biogenesis protein MshK -
  RHS39_RS14330 (RHS39_14330) gspM 3071756..3072406 (-) 651 WP_005497276.1 type II secretion system protein GspM -
  RHS39_RS14335 (RHS39_14335) - 3072403..3073848 (-) 1446 WP_017449448.1 MSHA biogenesis protein MshI -
  RHS39_RS14340 (RHS39_14340) csrD 3073860..3075869 (-) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  RHS39_RS14345 (RHS39_14345) ssb 3076110..3076640 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  RHS39_RS14350 (RHS39_14350) qstR 3076919..3077563 (+) 645 WP_025541505.1 LuxR C-terminal-related transcriptional regulator Regulator
  RHS39_RS14355 (RHS39_14355) galU 3077821..3078693 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=877440 RHS39_RS14345 WP_005466625.1 3076110..3076640(-) (ssb) [Vibrio parahaemolyticus strain TW01]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=877440 RHS39_RS14345 WP_005466625.1 3076110..3076640(-) (ssb) [Vibrio parahaemolyticus strain TW01]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCACAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483