Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   RHS39_RS14350 Genome accession   NZ_CP133900
Coordinates   3076919..3077563 (+) Length   214 a.a.
NCBI ID   WP_025541505.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TW01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3071919..3082563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS39_RS14335 (RHS39_14335) - 3072403..3073848 (-) 1446 WP_017449448.1 MSHA biogenesis protein MshI -
  RHS39_RS14340 (RHS39_14340) csrD 3073860..3075869 (-) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  RHS39_RS14345 (RHS39_14345) ssb 3076110..3076640 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  RHS39_RS14350 (RHS39_14350) qstR 3076919..3077563 (+) 645 WP_025541505.1 LuxR C-terminal-related transcriptional regulator Regulator
  RHS39_RS14355 (RHS39_14355) galU 3077821..3078693 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RHS39_RS14360 (RHS39_14360) uvrA 3078831..3081653 (+) 2823 WP_025547407.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24414.26 Da        Isoelectric Point: 8.7760

>NTDB_id=877441 RHS39_RS14350 WP_025541505.1 3076919..3077563(+) (qstR) [Vibrio parahaemolyticus strain TW01]
MRKSAYARKLFLISMEDDAAQKVVSLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=877441 RHS39_RS14350 WP_025541505.1 3076919..3077563(+) (qstR) [Vibrio parahaemolyticus strain TW01]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGTATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAGCGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAATGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGTGAACTGCAA
GTGCTGCGTTGTCTGCAAGCCGGGGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTCAAAAAGCTCTCGGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

99.533

100

0.995
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

51.628

100

0.519