Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RHS38_RS01845 Genome accession   NZ_CP133891
Coordinates   391219..391749 (+) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain M0904     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 386219..396749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS38_RS01835 (RHS38_01835) galU 389166..390038 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RHS38_RS01840 (RHS38_01840) qstR 390296..390940 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  RHS38_RS01845 (RHS38_01845) ssb 391219..391749 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  RHS38_RS01850 (RHS38_01850) csrD 391990..393999 (+) 2010 WP_029837280.1 RNase E specificity factor CsrD -
  RHS38_RS01855 (RHS38_01855) - 394011..395456 (+) 1446 WP_015297339.1 hypothetical protein -
  RHS38_RS01860 (RHS38_01860) gspM 395453..396103 (+) 651 WP_005497276.1 type II secretion system protein GspM -
  RHS38_RS01865 (RHS38_01865) - 396096..396425 (+) 330 WP_005481006.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=877375 RHS38_RS01845 WP_005466625.1 391219..391749(+) (ssb) [Vibrio parahaemolyticus strain M0904]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=877375 RHS38_RS01845 WP_005466625.1 391219..391749(+) (ssb) [Vibrio parahaemolyticus strain M0904]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483