Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   RHS38_RS01840 Genome accession   NZ_CP133891
Coordinates   390296..390940 (-) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain M0904     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 385296..395940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS38_RS01830 (RHS38_01830) uvrA 386206..389028 (-) 2823 WP_085609748.1 excinuclease ABC subunit UvrA -
  RHS38_RS01835 (RHS38_01835) galU 389166..390038 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RHS38_RS01840 (RHS38_01840) qstR 390296..390940 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  RHS38_RS01845 (RHS38_01845) ssb 391219..391749 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  RHS38_RS01850 (RHS38_01850) csrD 391990..393999 (+) 2010 WP_029837280.1 RNase E specificity factor CsrD -
  RHS38_RS01855 (RHS38_01855) - 394011..395456 (+) 1446 WP_015297339.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=877374 RHS38_RS01840 WP_005480993.1 390296..390940(-) (qstR) [Vibrio parahaemolyticus strain M0904]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=877374 RHS38_RS01840 WP_005480993.1 390296..390940(-) (qstR) [Vibrio parahaemolyticus strain M0904]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523