Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RHN82_RS07770 Genome accession   NZ_CP133860
Coordinates   1623216..1623740 (-) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter cloacae complex sp. EB5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1612231..1623057 1623216..1623740 flank 159


Gene organization within MGE regions


Location: 1612231..1623740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHN82_RS07735 (RHN82_07735) - 1612231..1615563 (+) 3333 WP_032646886.1 hypothetical protein -
  RHN82_RS07740 (RHN82_07740) - 1615564..1616028 (+) 465 WP_032646885.1 hypothetical protein -
  RHN82_RS07745 (RHN82_07745) - 1616025..1617176 (+) 1152 WP_032646884.1 response regulator -
  RHN82_RS07750 (RHN82_07750) - 1617823..1618242 (-) 420 WP_032646882.1 hypothetical protein -
  RHN82_RS07755 (RHN82_07755) - 1618235..1620268 (-) 2034 WP_032646881.1 integrase -
  RHN82_RS07760 (RHN82_07760) - 1620285..1621823 (-) 1539 WP_048984036.1 site-specific integrase -
  RHN82_RS07765 (RHN82_07765) - 1621810..1623057 (-) 1248 WP_047058417.1 site-specific integrase -
  RHN82_RS07770 (RHN82_07770) ssb 1623216..1623740 (-) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=877254 RHN82_RS07770 WP_003860284.1 1623216..1623740(-) (ssb) [Enterobacter cloacae complex sp. EB5]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=877254 RHN82_RS07770 WP_003860284.1 1623216..1623740(-) (ssb) [Enterobacter cloacae complex sp. EB5]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCACCAATGGACTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374