Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RHB97_RS10080 Genome accession   NZ_CP133859
Coordinates   1622923..1623447 (+) Length   174 a.a.
NCBI ID   WP_309885078.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain EB6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1617923..1628447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHB97_RS10060 (RHB97_10060) aphA 1618247..1618960 (+) 714 WP_022650226.1 acid phosphatase AphA -
  RHB97_RS10065 (RHB97_10065) - 1619073..1619489 (+) 417 WP_022650227.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RHB97_RS10070 (RHB97_10070) - 1619492..1619845 (+) 354 WP_003860288.1 MmcQ/YjbR family DNA-binding protein -
  RHB97_RS10075 (RHB97_10075) uvrA 1619849..1622671 (-) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  RHB97_RS10080 (RHB97_10080) ssb 1622923..1623447 (+) 525 WP_309885078.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RHB97_RS10085 (RHB97_10085) - 1623509..1623790 (-) 282 WP_003860282.1 YjcB family protein -
  RHB97_RS10090 (RHB97_10090) - 1624234..1625634 (+) 1401 WP_003860281.1 sensor domain-containing diguanylate cyclase -
  RHB97_RS10095 (RHB97_10095) - 1625900..1627465 (+) 1566 WP_003860279.1 EAL domain-containing protein -
  RHB97_RS10100 (RHB97_10100) soxS 1627472..1627798 (-) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  RHB97_RS10105 (RHB97_10105) soxR 1627897..1628355 (+) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18640.62 Da        Isoelectric Point: 5.2456

>NTDB_id=877244 RHB97_RS10080 WP_309885078.1 1622923..1623447(+) (ssb) [Enterobacter hormaechei strain EB6]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRSQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=877244 RHB97_RS10080 WP_309885078.1 1622923..1623447(+) (ssb) [Enterobacter hormaechei strain EB6]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAAGGCTCTCAGGTTTACATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAATGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGCC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTTAGCGGCGGCGCGCAGTCCCGTTCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

46.629

100

0.477
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.477
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374