Detailed information NTG0876944

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: WKU35_RS07770
• Genome accession: NZ_CP150127
• Coordinates: 1617408..1618412 (-)
• Length: 334 a.a.
• NCBI ID: WP_001005767.1
• Uniprot ID: Q6GG63
• Organism: Staphylococcus aureus subsp. aureus RN4220
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1612408..1623412

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WKU35_RS07755	yajC	1614940..1615200 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
WKU35_RS07760	tgt	1615219..1616358 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
WKU35_RS07765	queA	1616381..1617406 (-)	1026	WP_001019172.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
WKU35_RS07770	ruvB	1617408..1618412 (-)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
WKU35_RS07775	ruvA	1618444..1619046 (-)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
WKU35_RS07780	-	1619060..1619515 (-)	456	WP_000368902.1	ACT domain-containing protein	-
WKU35_RS07785	obgE	1619528..1620820 (-)	1293	WP_000496100.1	GTPase ObgE	-
WKU35_RS07790	rpmA	1621175..1621459 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
WKU35_RS07795	-	1621471..1621791 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
WKU35_RS07800	rplU	1621797..1622105 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
WKU35_RS07805	mreD	1622272..1622802 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37718.00 Da
• Isoelectric Point: 5.0865

>NTDB_id=876944 WKU35_RS07770 WP_001005767.1 1617408..1618412(-) (ruvB) [Staphylococcus aureus subsp. aureus RN4220]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=876944 WKU35_RS07770 WP_001005767.1 1617408..1618412(-) (ruvB) [Staphylococcus aureus subsp. aureus RN4220]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAACGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAGCGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACGAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGCGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGTGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: Q6GG63

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515