Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   WKU35_RS07775 Genome accession   NZ_CP150127
Coordinates   1618444..1619046 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus subsp. aureus RN4220     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1613444..1624046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKU35_RS07755 yajC 1614940..1615200 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  WKU35_RS07760 tgt 1615219..1616358 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  WKU35_RS07765 queA 1616381..1617406 (-) 1026 WP_001019172.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  WKU35_RS07770 ruvB 1617408..1618412 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  WKU35_RS07775 ruvA 1618444..1619046 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  WKU35_RS07780 - 1619060..1619515 (-) 456 WP_000368902.1 ACT domain-containing protein -
  WKU35_RS07785 obgE 1619528..1620820 (-) 1293 WP_000496100.1 GTPase ObgE -
  WKU35_RS07790 rpmA 1621175..1621459 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  WKU35_RS07795 - 1621471..1621791 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  WKU35_RS07800 rplU 1621797..1622105 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  WKU35_RS07805 mreD 1622272..1622802 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  WKU35_RS07810 mreC 1622802..1623644 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  WKU35_RS07815 - 1623844..1623963 (-) 120 WP_000840602.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=876945 WKU35_RS07775 WP_000271547.1 1618444..1619046(-) (ruvA) [Staphylococcus aureus subsp. aureus RN4220]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=876945 WKU35_RS07775 WP_000271547.1 1618444..1619046(-) (ruvA) [Staphylococcus aureus subsp. aureus RN4220]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425