Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RF670_RS12685 Genome accession   NZ_CP133788
Coordinates   2695822..2697972 (-) Length   716 a.a.
NCBI ID   WP_063721087.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain KCKM 0597     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2690822..2702972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RF670_RS12655 (RF670_12655) - 2691028..2691231 (-) 204 WP_060684281.1 hypothetical protein -
  RF670_RS12660 (RF670_12660) - 2691369..2692055 (-) 687 WP_053566441.1 CPBP family intramembrane glutamic endopeptidase -
  RF670_RS12665 (RF670_12665) - 2692149..2692829 (-) 681 WP_053566440.1 CPBP family intramembrane glutamic endopeptidase -
  RF670_RS12670 (RF670_12670) - 2692916..2693584 (-) 669 WP_063721086.1 CPBP family intramembrane glutamic endopeptidase -
  RF670_RS12675 (RF670_12675) - 2693651..2694340 (-) 690 WP_062688864.1 CPBP family intramembrane glutamic endopeptidase -
  RF670_RS12680 (RF670_12680) - 2694430..2695806 (-) 1377 WP_309563780.1 HlyD family secretion protein -
  RF670_RS12685 (RF670_12685) comA 2695822..2697972 (-) 2151 WP_063721087.1 peptide cleavage/export ABC transporter Regulator
  RF670_RS12690 (RF670_12690) plnE 2698239..2698409 (+) 171 WP_003641985.1 two-peptide bacteriocin plantaricin EF subunit PlnE -
  RF670_RS12695 (RF670_12695) plnF 2698434..2698592 (+) 159 WP_003643811.1 two-peptide bacteriocin plantaricin EF subunit PlnF -
  RF670_RS12700 (RF670_12700) - 2698691..2699464 (+) 774 WP_003646470.1 CPBP family intramembrane glutamic endopeptidase -
  RF670_RS12705 (RF670_12705) - 2699758..2700501 (-) 744 WP_173819220.1 response regulator transcription factor -
  RF670_RS12710 (RF670_12710) - 2700502..2701842 (-) 1341 WP_003643808.1 GHKL domain-containing protein -
  RF670_RS12715 (RF670_12715) - 2701856..2702005 (-) 150 WP_003643807.1 hypothetical protein -
  RF670_RS12720 (RF670_12720) - 2702137..2702883 (-) 747 WP_003643806.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 716 a.a.        Molecular weight: 79937.65 Da        Isoelectric Point: 6.7528

>NTDB_id=876918 RF670_RS12685 WP_063721087.1 2695822..2697972(-) (comA) [Lactiplantibacillus plantarum strain KCKM 0597]
MHWRNYVAQVDEMDCGVAALAMILKNYGSTTSLAYLRNIAKTSLEGTTALGLVKTAEKLGFETKAIQADMSLFDVQDLPL
PFIVHVTKNGNLQHFYVVVKTSKTHVVIADPDPTVAVISMSKERFESEWSGVALFFAPKSEYKPVKQDKGSLWGFIPSLL
KQRRLVINIVLAAVLITIISICGSYFLQAVIDTYIPNNMHSTLAVVAIGLIVFYTFQAIFTYAQNFLLAVLGQRLSIEII
LGYIRHVFELPMSFFATRRTGEIVSRFTDASKIIDALASTIVSLFLDVSIVIIMGAILVIQNMTLFWITLLSLPIYAVVI
LAFNKSFERLNQKEMESNAILSSAIIEDLHGIETVKALNGETERYQKIDSEFVDYLRKSLAYLKADTLQQALKLFIQLVL
EVVVLWVGANLVIHNQLSVGELMTYNALLAYFVNPLQNIINLQTKLQSAKVANNRLNEVYLVASEFEASRPIHNESQLNG
DIKLQGVSYRYGYGENVLDDVNLTIRQHDKVAIVGMSGSGKSTLVKLLIDFYQPNSGDVILNGFNVKNIDKHTLRTHINY
IPQEPYIFSATIEENLRLGNRSGITEKDIAKACQLALIDTDINKMAMQYQTKLDENGNTLSGGQRQRLTIARALLSPAQV
LIFDESTSGLDAITEKQLIDNLVAMTDKTIIFIAHRLSIAKRTNHIIVLHDGRVAEEGTHAALLNEHGYYYDLINS

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=876918 RF670_RS12685 WP_063721087.1 2695822..2697972(-) (comA) [Lactiplantibacillus plantarum strain KCKM 0597]
ATGCATTGGAGAAACTATGTTGCGCAAGTTGACGAGATGGACTGTGGGGTCGCAGCTTTAGCAATGATTTTGAAAAATTA
TGGTTCAACAACATCATTGGCCTATCTAAGAAATATTGCTAAAACGAGTTTAGAAGGGACTACGGCATTAGGATTAGTAA
AAACGGCCGAAAAGTTAGGTTTTGAAACCAAAGCAATTCAAGCAGATATGAGTCTTTTCGATGTACAAGATTTACCATTG
CCATTCATTGTGCATGTTACCAAAAATGGGAATCTACAGCATTTTTATGTCGTTGTAAAAACCTCGAAAACACATGTCGT
GATTGCTGATCCGGACCCAACAGTTGCGGTTATCAGTATGTCAAAGGAACGGTTTGAAAGCGAATGGTCCGGAGTTGCCC
TTTTCTTTGCACCGAAGTCGGAATATAAGCCAGTTAAGCAAGATAAGGGCTCACTATGGGGATTTATTCCAAGCTTATTA
AAGCAGCGCCGACTGGTTATTAATATTGTGCTTGCTGCAGTTTTAATCACGATTATTAGTATCTGTGGGTCTTATTTCTT
ACAAGCGGTGATTGATACTTATATTCCTAATAATATGCACAGTACATTGGCAGTGGTGGCAATTGGTCTAATCGTTTTTT
ATACCTTTCAGGCTATCTTTACTTATGCCCAGAATTTTTTATTGGCGGTTTTAGGTCAACGACTTTCGATTGAAATTATT
TTAGGCTATATTCGGCACGTCTTTGAATTGCCAATGAGTTTTTTTGCCACTCGGCGGACGGGGGAAATTGTTTCAAGGTT
TACGGATGCCAGTAAGATTATTGATGCGTTAGCTAGCACAATTGTTTCGCTGTTTTTAGATGTCAGCATCGTTATTATTA
TGGGGGCAATCTTGGTAATCCAGAATATGACACTTTTTTGGATTACGTTACTCTCGTTGCCAATCTACGCGGTTGTCATC
TTAGCCTTTAATAAATCCTTTGAACGATTGAATCAAAAGGAAATGGAAAGCAATGCTATTTTGAGTTCAGCCATTATTGA
GGATCTTCATGGGATTGAAACTGTTAAGGCGCTGAATGGTGAGACGGAACGTTATCAGAAAATTGATTCAGAATTTGTTG
ATTATCTACGTAAGAGTTTGGCCTATCTTAAAGCGGATACTTTGCAACAGGCATTAAAACTGTTTATACAGTTAGTCTTA
GAAGTTGTTGTTCTATGGGTGGGCGCCAATCTCGTCATTCATAATCAGTTATCAGTTGGGGAGCTCATGACATATAATGC
TTTATTAGCCTATTTTGTTAATCCACTACAGAATATTATTAATTTGCAGACTAAGCTTCAAAGCGCTAAGGTCGCTAACA
ACCGGTTAAATGAAGTGTATTTGGTCGCTAGTGAATTTGAGGCGTCACGGCCAATTCATAATGAAAGTCAATTAAATGGT
GATATTAAGTTACAAGGGGTCAGCTATCGTTATGGTTACGGTGAAAATGTCTTAGATGATGTTAATTTGACGATTCGACA
ACATGATAAAGTTGCAATTGTGGGGATGAGTGGCTCTGGCAAGTCCACGTTAGTTAAATTGCTTATTGATTTTTATCAAC
CAAATAGTGGTGATGTCATATTGAACGGCTTCAACGTTAAGAACATCGATAAGCATACATTGCGGACCCATATTAACTAC
ATCCCGCAGGAACCATACATCTTTTCAGCGACCATTGAAGAAAATTTAAGATTAGGTAATCGCAGCGGTATTACTGAGAA
AGATATTGCGAAGGCTTGCCAATTGGCGTTAATTGATACGGATATTAATAAAATGGCCATGCAATACCAAACTAAGCTAG
ATGAGAATGGTAATACACTATCAGGTGGTCAGCGACAACGATTAACGATTGCGAGAGCGTTATTATCACCCGCTCAAGTC
TTGATATTTGATGAGTCGACGAGTGGACTGGATGCAATTACTGAAAAACAATTAATCGATAATTTAGTGGCAATGACTGA
CAAGACGATTATTTTTATTGCCCACCGGTTGTCGATTGCAAAGCGGACGAATCATATCATCGTTCTGCATGATGGTCGGG
TCGCTGAAGAGGGGACCCATGCGGCATTGTTGAATGAACATGGTTACTATTACGACTTGATCAATAGCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(166-436)

Peptidase C39 family (Peptidase_C39)

(5-140)

ABC transporter (ABC_tran)

(498-648)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

59.046

99.581

0.588
  comA Streptococcus pneumoniae Rx1

58.766

99.581

0.585
  comA Streptococcus pneumoniae D39

58.766

99.581

0.585
  comA Streptococcus pneumoniae R6

58.766

99.581

0.585
  comA Streptococcus pneumoniae TIGR4

58.626

99.581

0.584
  comA Streptococcus mitis SK321

58.485

99.581

0.582
  comA Streptococcus gordonii str. Challis substr. CH1

57.242

100

0.574
  comA/nlmT Streptococcus mutans UA159

54.735

100

0.549