Detailed information NTG0087689

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PszF2a_RS04905
• Genome accession: NZ_AP024722
• Coordinates: 1034358..1035224 (+)
• Length: 288 a.a.
• NCBI ID: WP_221293034.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain F2a
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1029358..1040224

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PszF2a_RS04880 (PszF2a_09590)	-	1029454..1030263 (-)	810	WP_245002919.1	hypothetical protein	-
PszF2a_RS04885	-	1030404..1030856 (-)	453	WP_125877166.1	hypothetical protein	-
PszF2a_RS21525 (PszF2a_09600)	pilV	1030872..1031051 (-)	180	WP_125877172.1	type IV pilin protein	Machinery gene
PszF2a_RS04895 (PszF2a_09610)	pilB	1031428..1033131 (+)	1704	WP_125877164.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PszF2a_RS04900 (PszF2a_09620)	pilC	1033134..1034354 (+)	1221	WP_125877162.1	type II secretion system F family protein	Machinery gene
PszF2a_RS04905 (PszF2a_09630)	pilD	1034358..1035224 (+)	867	WP_221293034.1	prepilin peptidase	Machinery gene
PszF2a_RS04910	coaE	1035356..1035964 (+)	609	WP_080977605.1	dephospho-CoA kinase	-
PszF2a_RS04915 (PszF2a_09650)	yacG	1035961..1036158 (+)	198	WP_041771656.1	DNA gyrase inhibitor YacG	-
PszF2a_RS04920 (PszF2a_09660)	-	1036171..1036851 (-)	681	WP_013981946.1	energy-coupling factor ABC transporter permease	-
PszF2a_RS04925 (PszF2a_09670)	-	1036908..1037948 (-)	1041	WP_221293035.1	NADP(H)-dependent aldo-keto reductase	-
PszF2a_RS04930 (PszF2a_09680)	rplM	1038363..1038791 (+)	429	WP_003287302.1	50S ribosomal protein L13	-
PszF2a_RS04935 (PszF2a_09690)	rpsI	1038807..1039199 (+)	393	WP_013981948.1	30S ribosomal protein S9	-
PszF2a_RS04940 (PszF2a_09700)	petA	1039454..1040047 (+)	594	WP_013981949.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32075.01 Da
• Isoelectric Point: 7.2173

>NTDB_id=87689 PszF2a_RS04905 WP_221293034.1 1034358..1035224(+) (pilD) [Stutzerimonas stutzeri strain F2a]
MIYELMASQVLAFVLSAAVLGLLVGSFLNVVIYRVPIMMQREWRMQAREYLEYPPEPIGERFNLLVPSSRCPHCGHRIRA
WENIPLVSWLALRGKCSSCQAPISCRYPLVELACGVLSGYVAWHFGFSWQAGAMLLLTWGLLAMSMIDVDHQLLPDSLVL
PLLWLGLIANSFALFASLEDALWGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGA
VLGSILLRVQRAESSTPIPFGPYLAIAGWIALLWGDRITESYLQFARF

Nucleotide

• Length: 867 bp

>NTDB_id=87689 PszF2a_RS04905 WP_221293034.1 1034358..1035224(+) (pilD) [Stutzerimonas stutzeri strain F2a]
ATGATCTACGAATTGATGGCCAGCCAAGTGCTGGCCTTTGTTTTGTCTGCTGCAGTGCTCGGTCTGCTGGTTGGCAGCTT
TCTCAATGTCGTCATCTACCGTGTGCCGATCATGATGCAGCGCGAATGGCGCATGCAGGCGCGGGAATATTTGGAGTATC
CGCCCGAGCCAATTGGGGAGCGTTTCAATCTACTGGTGCCGAGTTCACGCTGCCCTCACTGCGGTCATCGTATCCGTGCC
TGGGAGAACATTCCCTTGGTCAGCTGGCTGGCGCTGCGTGGAAAGTGCTCGTCTTGTCAGGCGCCGATCAGCTGTCGATA
TCCGTTGGTTGAGCTGGCGTGTGGCGTGCTATCCGGATACGTGGCATGGCATTTCGGTTTTTCCTGGCAGGCAGGGGCGA
TGCTTCTGCTGACCTGGGGGTTGCTGGCGATGAGCATGATCGATGTCGATCATCAGTTGCTGCCTGACTCGCTCGTGCTG
CCCCTCTTATGGTTAGGGTTGATTGCCAACAGCTTTGCTCTGTTCGCCTCTCTCGAGGATGCGCTGTGGGGGGCGATAGC
CGGTTACCTGAGCCTATGGTCCGTTTATTGGCTGTTCAAGCTGGTCACAGGCAAAGAGGGTATGGGCTACGGCGATTTCA
AGCTGCTGGCGATGCTTGGTGCCTGGGGCGGCTGGCAGGTTCTGCCCCTCACTATCTTGCTGTCTTCGGTGGTCGGCGCC
GTTCTTGGCAGTATTTTGCTGAGGGTGCAGCGGGCTGAAAGCAGTACGCCCATTCCGTTCGGGCCGTATCTGGCGATAGC
GGGGTGGATTGCGTTGCTTTGGGGCGACCGAATTACCGAAAGCTACCTCCAGTTCGCTCGCTTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.818	95.486	0.552
pilD	Vibrio campbellii strain DS40M4	57.664	95.139	0.549
pilD	Acinetobacter baumannii D1279779	51.439	96.528	0.497
pilD	Acinetobacter nosocomialis M2	51.439	96.528	0.497
pilD	Neisseria gonorrhoeae MS11	53.612	91.319	0.49