Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   RF668_RS06660 Genome accession   NZ_CP133787
Coordinates   1281834..1282817 (+) Length   327 a.a.
NCBI ID   WP_043735535.1    Uniprot ID   A0AAX4A9V5
Organism   Lactococcus cremoris strain KCKM 0438     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1276834..1287817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RF668_RS06640 (RF668_06640) - 1276900..1277736 (-) 837 WP_309558324.1 HAD family hydrolase -
  RF668_RS06645 (RF668_06645) - 1278042..1279463 (+) 1422 WP_012898314.1 NCS2 family permease -
  RF668_RS06650 (RF668_06650) - 1279672..1280520 (+) 849 WP_043735537.1 alpha/beta hydrolase -
  RF668_RS06655 (RF668_06655) - 1280674..1281759 (+) 1086 WP_014735114.1 YdcF family protein -
  RF668_RS06660 (RF668_06660) coiA 1281834..1282817 (+) 984 WP_043735535.1 competence protein CoiA Machinery gene
  RF668_RS06665 (RF668_06665) pepF 1282893..1284698 (+) 1806 WP_043735532.1 oligoendopeptidase F Regulator
  RF668_RS06670 (RF668_06670) - 1284701..1285384 (+) 684 WP_021037658.1 O-methyltransferase -
  RF668_RS06675 (RF668_06675) - 1285540..1286466 (+) 927 WP_014572243.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 39185.78 Da        Isoelectric Point: 9.7055

>NTDB_id=876884 RF668_RS06660 WP_043735535.1 1281834..1282817(+) (coiA) [Lactococcus cremoris strain KCKM 0438]
MLTAIDENNKIINLLELDRKELTGKFYCPSCHSELLIKNGQIKVLHFAHKSLKSCNLWLENESDQHLGLKKILYQWFKRT
DKVEIERYLPELNQRPDLLVNDKIAIEIQCSHLSIKRLKERTENYKAHGFKVLWLMGKDLWLAEQVTELQKNLVYFSENR
GFFYWELDFQRKKLRLKSLIHEDLRGRIICLQEEIPFGQGRLIAHLRLPYLAQKLMKIPTFKDPKLSSFIRQQLYYQSSK
WMKIQEKYYQKGENLLTKKFEGPYIAPLGLNLLESFTDEMTITTFTQIDQNVKLYYENFLINFQRNSLEMLYPPRFYAIM
GKQKKEK

Nucleotide


Download         Length: 984 bp        

>NTDB_id=876884 RF668_RS06660 WP_043735535.1 1281834..1282817(+) (coiA) [Lactococcus cremoris strain KCKM 0438]
ATGCTGACAGCAATTGATGAAAATAATAAAATAATAAACTTACTGGAATTAGACCGCAAAGAATTGACTGGAAAATTTTA
TTGTCCTTCTTGTCATTCAGAGCTACTTATTAAAAATGGGCAGATAAAAGTTCTTCATTTTGCCCATAAATCTCTAAAGA
GCTGCAATTTATGGTTGGAAAATGAGTCAGACCAGCATTTAGGTTTGAAAAAAATATTATATCAGTGGTTTAAAAGGACT
GACAAAGTCGAAATTGAACGCTATTTGCCCGAACTTAACCAAAGACCAGATTTATTAGTAAATGACAAAATCGCTATTGA
GATACAATGCTCTCATTTATCTATTAAGCGCCTCAAAGAACGTACAGAAAATTATAAGGCGCATGGCTTTAAAGTGCTTT
GGTTGATGGGAAAGGATTTATGGCTGGCTGAACAGGTGACAGAACTTCAAAAAAATTTAGTTTATTTCTCGGAAAATAGA
GGATTCTTTTATTGGGAGTTAGATTTTCAGAGGAAAAAATTAAGATTAAAATCTCTAATTCATGAGGATTTACGTGGCAG
AATCATTTGCTTACAAGAGGAAATTCCTTTTGGACAAGGACGACTTATTGCGCATCTACGCTTACCTTATTTGGCTCAAA
AACTGATGAAAATTCCTACTTTTAAAGATCCTAAACTTTCTAGTTTTATTCGTCAGCAATTATACTATCAATCATCAAAA
TGGATGAAAATTCAAGAAAAATATTATCAAAAAGGAGAAAATTTACTGACGAAAAAATTTGAAGGTCCATACATTGCTCC
ACTAGGTTTAAATTTACTAGAGAGTTTTACTGACGAAATGACAATCACAACTTTTACTCAGATTGATCAAAATGTTAAGC
TTTACTATGAAAATTTTTTAATAAATTTCCAAAGAAATAGCCTTGAAATGCTCTATCCTCCCCGTTTCTATGCTATAATG
GGAAAGCAGAAGAAGGAAAAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

97.248

100

0.972
  coiA Streptococcus mitis NCTC 12261

44.099

98.471

0.434
  coiA Streptococcus pneumoniae TIGR4

43.21

99.083

0.428
  coiA Streptococcus pneumoniae Rx1

43.21

99.083

0.428
  coiA Streptococcus pneumoniae D39

43.21

99.083

0.428
  coiA Streptococcus pneumoniae R6

43.21

99.083

0.428