Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RF668_RS06665 Genome accession   NZ_CP133787
Coordinates   1282893..1284698 (+) Length   601 a.a.
NCBI ID   WP_043735532.1    Uniprot ID   A0AAX4AGF7
Organism   Lactococcus cremoris strain KCKM 0438     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1277893..1289698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RF668_RS06645 (RF668_06645) - 1278042..1279463 (+) 1422 WP_012898314.1 NCS2 family permease -
  RF668_RS06650 (RF668_06650) - 1279672..1280520 (+) 849 WP_043735537.1 alpha/beta hydrolase -
  RF668_RS06655 (RF668_06655) - 1280674..1281759 (+) 1086 WP_014735114.1 YdcF family protein -
  RF668_RS06660 (RF668_06660) coiA 1281834..1282817 (+) 984 WP_043735535.1 competence protein CoiA Machinery gene
  RF668_RS06665 (RF668_06665) pepF 1282893..1284698 (+) 1806 WP_043735532.1 oligoendopeptidase F Regulator
  RF668_RS06670 (RF668_06670) - 1284701..1285384 (+) 684 WP_021037658.1 O-methyltransferase -
  RF668_RS06675 (RF668_06675) - 1285540..1286466 (+) 927 WP_014572243.1 peptidyl-prolyl cis-trans isomerase -
  RF668_RS06680 (RF668_06680) alaS 1286728..1289346 (+) 2619 WP_043735530.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69980.68 Da        Isoelectric Point: 4.9158

>NTDB_id=876885 RF668_RS06665 WP_043735532.1 1282893..1284698(+) (pepF) [Lactococcus cremoris strain KCKM 0438]
MVKNRNEIPEALTWDLTSIFSTDQKWETELEKVKKELSLVETNDKGHLLDSAEALLTITKNMLSISQKVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVNFGESYAFYEPEFLKITKETYEQWLEILQELKNYDHMFERLFAKKEHILSQKEEKILAA
AGEIFESPSETFEIFDNADVKFPFVKNELGEKIQLTHGNYSSLMESKNREVRKATYEALYSNYEQYQHTYAKTLQTNVKV
HNFNAQIRAYDSARQAALMSNFVPEKVYDVLIEGIHQHLPLLHRYIELRKKILGISDFKMYDIYTPLSNLDYKFNYTEGV
KKAQEVLAIFGEEYSQKVKAAFDERWIDVEENVGKRSGAYSGGSYDTKAFMLLNWQGTLDDLFTLVHEMGHSIHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESNDEKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEVDAEGEVLTSE
FLNSLYGELNEKYYGLSAKENPEIQFEWARIPHFYYNFYVFQYATGFAAASFLAEKVVHGSATDRQNYLDYLKAGSSAYP
LDVIAKAGVNMESTDYLESAFKLFEKRLNELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=876885 RF668_RS06665 WP_043735532.1 1282893..1284698(+) (pepF) [Lactococcus cremoris strain KCKM 0438]
ATGGTAAAAAATAGAAATGAAATCCCTGAAGCCTTGACTTGGGATTTGACATCAATTTTTTCAACAGATCAAAAATGGGA
AACAGAATTAGAGAAGGTAAAAAAAGAGCTTTCACTTGTTGAGACAAATGATAAAGGTCATTTACTTGATTCAGCAGAAG
CTTTACTGACAATTACTAAAAATATGCTATCAATTTCTCAAAAAGTTGAAAAGCTTTATGTTTATGCTTCAATGAAAAAT
GATCAAGATACAAGAGAAGCAAAGTATCAAGAATATCAATCAAAAGCAACGGCTCTCTACGTTAATTTTGGGGAAAGCTA
TGCCTTTTATGAACCTGAATTTTTAAAAATTACAAAAGAAACCTACGAACAATGGTTAGAAATCCTTCAGGAATTGAAAA
ATTACGATCACATGTTTGAACGTTTATTTGCTAAAAAAGAACATATCCTTAGTCAAAAAGAAGAAAAAATATTGGCGGCA
GCGGGTGAAATCTTTGAAAGTCCTTCGGAGACTTTTGAAATTTTCGATAATGCAGATGTTAAATTTCCTTTTGTTAAAAA
TGAATTGGGAGAAAAGATTCAGTTGACACATGGAAATTATAGCTCTCTTATGGAAAGTAAAAACAGAGAAGTAAGAAAAG
CGACTTATGAAGCACTTTACAGCAATTATGAACAATATCAACATACCTATGCAAAAACTTTGCAGACCAATGTAAAAGTT
CATAATTTTAATGCCCAAATACGCGCATATGACTCAGCACGTCAGGCAGCTTTGATGAGTAATTTTGTTCCAGAAAAAGT
TTATGACGTCTTGATAGAAGGCATTCATCAACACTTACCACTTTTACATCGCTATATTGAATTACGTAAAAAAATCTTAG
GAATTTCTGATTTCAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTCAATTACACTGAAGGAGTT
AAGAAAGCGCAAGAAGTGCTTGCAATTTTTGGTGAAGAGTATAGTCAGAAAGTTAAAGCGGCTTTTGATGAACGTTGGAT
TGATGTTGAAGAAAATGTCGGGAAACGGTCAGGGGCATACTCAGGTGGTTCTTATGATACCAAGGCATTTATGTTACTCA
ATTGGCAAGGGACTTTGGACGATCTTTTTACATTGGTTCATGAGATGGGGCATTCTATTCACAGCACTTTTACGAGGGAA
AATCAACCTTATGTTTATGGCGATTACCCGATCTTCTTAGCAGAGATTGCTTCAACTACCAATGAAAATATTTTAACTGA
GACTTTGCTCAAAGAAAGTAATGATGAAAAGGAACGTTTTGCTCTTTTAAACCATTGGTTAGATAGTTTTCGAGGAACCG
TATTTCGTCAAAGTCAATTTGCTGAATTTGAACAAAAAATTCACGAAGTCGATGCTGAAGGTGAAGTGTTGACGAGCGAA
TTTTTGAATTCTCTTTATGGCGAACTTAATGAAAAATATTATGGCTTATCTGCCAAAGAAAATCCTGAAATTCAGTTTGA
ATGGGCAAGAATTCCTCATTTCTATTATAATTTTTACGTTTTTCAATACGCAACAGGATTTGCCGCAGCCTCATTTCTAG
CTGAAAAGGTGGTGCATGGTTCGGCTACTGACCGCCAAAATTATCTTGATTATTTAAAAGCTGGTTCATCAGCCTATCCA
CTAGACGTGATTGCAAAAGCTGGAGTTAATATGGAATCTACAGATTACTTAGAGTCTGCTTTTAAGCTTTTTGAAAAACG
TTTGAATGAATTAGAAAAATTAGTTGAAAAAGGAGTCCATCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-182)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

63.727

100

0.637