Detailed information
Bioinformatically predicted
Overview
| Name | comGG | Type | Machinery gene |
| Locus tag | RF668_RS04185 | Genome accession | NZ_CP133787 |
| Coordinates | 827340..827639 (+) | Length | 99 a.a. |
| NCBI ID | WP_021037947.1 | Uniprot ID | A0AAX4AJK4 |
| Organism | Lactococcus cremoris strain KCKM 0438 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 822340..832639
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RF668_RS04155 (RF668_04155) | comGA | 823949..824929 (+) | 981 | WP_043736167.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| RF668_RS04160 (RF668_04160) | comGB | 824829..825854 (+) | 1026 | WP_052206589.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| RF668_RS04165 (RF668_04165) | comGC | 825898..826197 (+) | 300 | WP_052206590.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| RF668_RS04170 (RF668_04170) | comGD | 826208..826639 (+) | 432 | WP_050750513.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| RF668_RS04175 (RF668_04175) | comGE | 826611..826907 (+) | 297 | WP_043736169.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| RF668_RS04180 (RF668_04180) | comGF | 826891..827316 (+) | 426 | WP_374049086.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| RF668_RS04185 (RF668_04185) | comGG | 827340..827639 (+) | 300 | WP_021037947.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| RF668_RS04190 (RF668_04190) | - | 827720..828157 (+) | 438 | WP_011677180.1 | zinc-dependent MarR family transcriptional regulator | - |
| RF668_RS04195 (RF668_04195) | - | 828154..828996 (+) | 843 | WP_011677179.1 | metal ABC transporter solute-binding protein, Zn/Mn family | - |
| RF668_RS04200 (RF668_04200) | - | 829175..829912 (+) | 738 | WP_011836039.1 | metal ABC transporter ATP-binding protein | - |
| RF668_RS04205 (RF668_04205) | - | 829905..830714 (+) | 810 | WP_011677177.1 | metal ABC transporter permease | - |
| RF668_RS04210 (RF668_04210) | - | 830736..831608 (-) | 873 | WP_043736178.1 | RluA family pseudouridine synthase | - |
| RF668_RS04215 (RF668_04215) | - | 831803..832180 (+) | 378 | WP_041168662.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 11269.27 Da Isoelectric Point: 9.8236
>NTDB_id=876872 RF668_RS04185 WP_021037947.1 827340..827639(+) (comGG) [Lactococcus cremoris strain KCKM 0438]
MVLLLIFSLFLQFYLQKQVLTAQQLKIEKERLTAELMVSLALKKDLKTSGQLNFDCGNLTYKLLTDLSADSTSGGQTVSN
KTYCFDVRLKDGRIFQIKK
MVLLLIFSLFLQFYLQKQVLTAQQLKIEKERLTAELMVSLALKKDLKTSGQLNFDCGNLTYKLLTDLSADSTSGGQTVSN
KTYCFDVRLKDGRIFQIKK
Nucleotide
Download Length: 300 bp
>NTDB_id=876872 RF668_RS04185 WP_021037947.1 827340..827639(+) (comGG) [Lactococcus cremoris strain KCKM 0438]
TTGGTTTTACTGCTAATTTTTTCTTTATTTCTACAGTTTTATTTGCAAAAACAGGTGCTTACAGCTCAGCAATTGAAAAT
AGAAAAGGAGCGACTGACAGCCGAATTAATGGTTTCATTGGCTCTTAAAAAGGATTTGAAAACGAGTGGTCAACTTAATT
TTGATTGTGGAAATTTAACTTATAAATTACTGACAGATCTGTCAGCTGATTCAACTAGCGGTGGTCAAACTGTTAGTAAT
AAAACTTATTGTTTTGATGTTCGGCTTAAGGATGGAAGAATTTTTCAAATAAAAAAATAA
TTGGTTTTACTGCTAATTTTTTCTTTATTTCTACAGTTTTATTTGCAAAAACAGGTGCTTACAGCTCAGCAATTGAAAAT
AGAAAAGGAGCGACTGACAGCCGAATTAATGGTTTCATTGGCTCTTAAAAAGGATTTGAAAACGAGTGGTCAACTTAATT
TTGATTGTGGAAATTTAACTTATAAATTACTGACAGATCTGTCAGCTGATTCAACTAGCGGTGGTCAAACTGTTAGTAAT
AAAACTTATTGTTTTGATGTTCGGCTTAAGGATGGAAGAATTTTTCAAATAAAAAAATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGG | Lactococcus lactis subsp. cremoris KW2 |
100 |
100 |
1 |