Detailed information NTG0087683

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: PszF2a_RS02940
• Genome accession: NZ_AP024722
• Coordinates: 639549..640613 (+)
• Length: 354 a.a.
• NCBI ID: WP_126526953.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain F2a
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 634549..645613

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PszF2a_RS02925 (PszF2a_05780)	-	634675..635469 (+)	795	WP_170799318.1	thermonuclease family protein	-
PszF2a_RS02930 (PszF2a_05790)	-	635611..636879 (+)	1269	WP_011911783.1	malic enzyme-like NAD(P)-binding protein	-
PszF2a_RS02935 (PszF2a_05800)	-	636946..639369 (-)	2424	WP_221292928.1	penicillin-binding protein 1A	-
PszF2a_RS02940 (PszF2a_05810)	comM	639549..640613 (+)	1065	WP_126526953.1	pilus assembly protein PilM	Machinery gene
PszF2a_RS02945 (PszF2a_05820)	-	640613..641185 (+)	573	WP_126526952.1	PilN domain-containing protein	-
PszF2a_RS02950 (PszF2a_05830)	pilO	641182..641805 (+)	624	WP_019405681.1	type 4a pilus biogenesis protein PilO	-
PszF2a_RS02955 (PszF2a_05840)	pilP	641802..642329 (+)	528	WP_126526951.1	type 4a pilus biogenesis lipoprotein PilP	-
PszF2a_RS02960 (PszF2a_05850)	pilQ	642383..644482 (+)	2100	WP_126526950.1	type IV pilus secretin PilQ	Machinery gene
PszF2a_RS02965 (PszF2a_05860)	aroK	644489..645034 (+)	546	WP_041755271.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37774.31 Da
• Isoelectric Point: 4.6880

>NTDB_id=87683 PszF2a_RS02940 WP_126526953.1 639549..640613(+) (comM) [Stutzerimonas stutzeri strain F2a]
MLGLFTKKANTLLGIDISSTSVKLLELSRSGNRYRVEAYAVEPLPPNAVVEKNIAELEGVGQALQRVVAKAKTGCKSAVV
AVSGSAVITKMIEMDAGLSDEELENQLKIEADQYIPYPLEEVAIDFEVQGPAPRAPGRVEVLLAACRKENVEIREAALAL
AGLTAKVVDVEAYALERSYGLLASQLGTAHGELTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSQ
EEAGLAKKQGGLPDDYDSEVLLPFKEAVVQQVSRSLQFFFAAGQFHDVDCILLAGGTASIPGLDHMIQQKIGTQTLVANP
FADMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=87683 PszF2a_RS02940 WP_126526953.1 639549..640613(+) (comM) [Stutzerimonas stutzeri strain F2a]
GTGCTAGGGCTCTTCACTAAGAAAGCGAACACGCTGCTTGGGATCGATATCAGTTCGACCTCAGTCAAGCTCCTCGAATT
AAGTCGATCGGGTAATCGGTACCGCGTCGAGGCTTATGCCGTCGAGCCGCTACCGCCGAATGCCGTCGTCGAAAAGAACA
TCGCCGAACTTGAGGGTGTCGGTCAGGCCCTGCAGCGAGTCGTTGCCAAGGCCAAGACCGGCTGCAAGTCCGCTGTTGTC
GCTGTCTCCGGGTCTGCCGTCATCACAAAGATGATCGAGATGGATGCCGGGCTTTCTGATGAAGAGCTCGAGAACCAGCT
CAAGATCGAGGCAGATCAGTACATCCCCTACCCACTGGAGGAAGTCGCGATCGACTTCGAGGTGCAAGGTCCTGCGCCTC
GCGCGCCTGGCAGGGTAGAGGTTCTCCTCGCCGCTTGCCGTAAAGAGAATGTCGAGATCCGTGAAGCCGCGCTGGCCTTG
GCCGGGCTTACCGCCAAAGTGGTGGATGTCGAGGCCTATGCGCTTGAGCGCTCCTATGGGTTGCTCGCTTCACAGCTGGG
TACAGCGCACGGCGAGCTGACCGTTGCCGTCGTCGATATCGGCGCGACCATGACAACCCTGAGCGTGCTGCATAACGGGC
GTACCATCTACACGCGCGAGCAGCTGTTCGGTGGTCGCCAACTGACCGAAGAGATCCAGCGCCGCTACGGTCTGTCTCAG
GAAGAAGCCGGCCTTGCCAAGAAGCAAGGCGGTCTCCCAGATGACTACGACAGTGAAGTCCTGCTTCCGTTCAAGGAGGC
GGTGGTGCAGCAGGTATCCCGCTCGTTGCAGTTCTTCTTCGCTGCAGGGCAGTTCCACGACGTCGACTGCATCCTGCTCG
CGGGCGGGACGGCCTCCATTCCAGGTCTCGATCACATGATTCAGCAAAAGATCGGAACGCAAACTCTAGTGGCTAATCCT
TTTGCCGATATGGCTTTGAGCAGCAAGGTGAACGCCGGGGCGCTGGCCAGTGATGCGCCTGCGTTAATGATTGCATGCGG
TTTGGCGCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	55.932	100	0.559
pilM	Acinetobacter baumannii D1279779	55.932	100	0.559
comM	Acinetobacter baylyi ADP1	53.39	100	0.534
pilM	Legionella pneumophila strain ERS1305867	46.328	100	0.463